Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_K16
(848 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27245|YH24_CAEEL Putative aminopeptidase W07G4.4 in chr... 105 2e-22
sp|P47707|AMPA_MYCSA Probable cytosol aminopeptidase (Leuci... 59 1e-08
sp|O67868|AMPA_AQUAE Probable cytosol aminopeptidase (Leuci... 59 1e-08
sp|P75206|AMPA_MYCPN Probable cytosol aminopeptidase (Leuci... 58 3e-08
sp|O84049|AMPA_CHLTR Probable cytosol aminopeptidase (Leuci... 58 3e-08
sp|P38019|AMPA_CHLMU Probable cytosol aminopeptidase (Leuci... 58 3e-08
sp|O32106|AMPA_BACSU Probable cytosol aminopeptidase (Leuci... 57 6e-08
sp|Q8G1M4|AMPA_BRUSU Probable cytosol aminopeptidase (Leuci... 57 8e-08
sp|Q8YG99|AMPA_BRUME Probable cytosol aminopeptidase (Leuci... 57 8e-08
sp|Q6MH10|AMPA_BDEBA Probable cytosol aminopeptidase (Leuci... 55 2e-07
>sp|Q27245|YH24_CAEEL Putative aminopeptidase W07G4.4 in chromosome V
Length = 522
Score = 105 bits (261), Expect = 2e-22
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +2
Query: 590 IERHDGRVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTG 769
++ H R+++ EY + + ++T F+VGKG+T DTGG D+K GGHM GM RDK G+A V G
Sbjct: 244 VKEHQARLIRLEYVGEGETQDTFFVVGKGVTIDTGGCDLKTGGHMFGMCRDKYGSAVVGG 303
Query: 770 FFKALSLLKPKKFKAVGLCAYVRNSI 847
FFKA+ +LKPK KAVG VRNSI
Sbjct: 304 FFKAIDVLKPKNIKAVGYMCMVRNSI 329
>sp|P47707|AMPA_MYCSA Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 520
Score = 59.3 bits (142), Expect = 1e-08
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +2
Query: 575 ELILVIER---HDGRVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDK 745
+L+L + + ++ RVV EY +E LVGKGIT+D+GG +K M GM D
Sbjct: 197 DLLLSVNKGSVYEPRVVIIEYKGNPSSQEKTVLVGKGITFDSGGYSLKPPKFMLGMKYDM 256
Query: 746 CGAAAVTGFFKALSLLKPKKFKAVGLC 826
G+A V KA++ LKP K + +C
Sbjct: 257 SGSAIVAAVMKAIAQLKPNKNVSAIMC 283
>sp|O67868|AMPA_AQUAE Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 493
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
R + Y + +E I LVGKG+T+D+GG ++K G +M M DK GA AV G +A++
Sbjct: 236 RFIHLIYKPSGKPKEKIALVGKGLTFDSGGLNIKPGDYMRTMKMDKSGACAVLGIMRAIA 295
Query: 788 LLKP 799
LKP
Sbjct: 296 QLKP 299
>sp|P75206|AMPA_MYCPN Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 445
Score = 58.2 bits (139), Expect = 3e-08
Identities = 32/80 (40%), Positives = 45/80 (56%)
Frame = +2
Query: 602 DGRVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKA 781
+ R++ Y++ + ET+ LVGKGITYD+GG ++K G +M GM D GAA V A
Sbjct: 194 EARLLVISYNNNKKSSETLALVGKGITYDSGGMNIKTGDYMRGMKYDMSGAAIVCSTVLA 253
Query: 782 LSLLKPKKFKAVGLCAYVRN 841
L+ K K V + A N
Sbjct: 254 LAKNKVKT-NVVAVAALTEN 272
>sp|O84049|AMPA_CHLTR Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 499
Score = 58.2 bits (139), Expect = 3e-08
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
R + +Y K + ++ L+GKG+T+D+GG D+K G M M D GAA V G F AL+
Sbjct: 242 RFIVLDYQGKPKSKDRTVLIGKGVTFDSGGLDLKPGKAMITMKEDMAGAATVLGIFSALA 301
Query: 788 LLK---------PKKFKAVGLCAY 832
L+ P A+G AY
Sbjct: 302 SLELPINVTGIIPATENAIGSAAY 325
>sp|P38019|AMPA_CHLMU Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 499
Score = 58.2 bits (139), Expect = 3e-08
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
R + +Y K + ++ L+GKG+T+D+GG D+K G M M D GAA V G F AL+
Sbjct: 242 RFIVLDYQGKPKSKDRTVLIGKGVTFDSGGLDLKPGKAMITMKEDMAGAATVLGIFSALA 301
Query: 788 LLK---------PKKFKAVGLCAY 832
L+ P A+G AY
Sbjct: 302 SLELPINVTGIIPATENAIGSAAY 325
>sp|O32106|AMPA_BACSU Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 500
Score = 57.0 bits (136), Expect = 6e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
+++ +Y K + E+ + LVGKGIT+DTGG +K + GM D GAAAV G + +
Sbjct: 240 KMIVLKYQGKKEWEDVVGLVGKGITFDTGGYSIKTKSGIVGMKSDMGGAAAVLGAMETIG 299
Query: 788 LLKPKK 805
L+P++
Sbjct: 300 ELRPEQ 305
>sp|Q8G1M4|AMPA_BRUSU Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 497
Score = 56.6 bits (135), Expect = 8e-08
Identities = 32/78 (41%), Positives = 43/78 (55%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
R+V E+ E+ I VGKG+ +DTGG +K +M M D GAAAVTG +AL+
Sbjct: 242 RLVVMEWHGAKGKEKPIAFVGKGVVFDTGGISIKPAANMEDMKGDMGGAAAVTGLMRALA 301
Query: 788 LLKPKKFKAVGLCAYVRN 841
K K A+G+ V N
Sbjct: 302 GRK-AKVNAIGVIGLVEN 318
>sp|Q8YG99|AMPA_BRUME Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 485
Score = 56.6 bits (135), Expect = 8e-08
Identities = 32/78 (41%), Positives = 43/78 (55%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
R+V E+ E+ I VGKG+ +DTGG +K +M M D GAAAVTG +AL+
Sbjct: 230 RLVVMEWHGAKGKEKPIAFVGKGVVFDTGGISIKPAANMEDMKGDMGGAAAVTGLMRALA 289
Query: 788 LLKPKKFKAVGLCAYVRN 841
K K A+G+ V N
Sbjct: 290 GRK-AKVNAIGVIGLVEN 306
>sp|Q6MH10|AMPA_BDEBA Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 500
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/80 (40%), Positives = 41/80 (51%)
Frame = +2
Query: 608 RVVKFEYDSKDQVEETIFLVGKGITYDTGGADVKAGGHMAGMHRDKCGAAAVTGFFKALS 787
R + EY ++ + VGKG+T+D GG +K G M M D CG A V G A++
Sbjct: 244 RFIIMEYKGAAASKKPVCFVGKGLTFDCGGISIKPGAGMEEMKYDMCGGANVIGTLLAIA 303
Query: 788 LLKPKKFKAVGLCAYVRNSI 847
LK K AVGL A N I
Sbjct: 304 KLK-LKVNAVGLVASTENLI 322
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,612,465
Number of Sequences: 369166
Number of extensions: 1463704
Number of successful extensions: 3762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3746
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)