Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J24
(478 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 246 1e-65
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 246 3e-65
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 245 3e-65
sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial pre... 241 5e-64
sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial pre... 241 5e-64
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 239 2e-63
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 238 7e-63
sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor 235 3e-62
sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor 234 6e-62
sp|P83372|CISY_FRAAN Citrate synthase, mitochondrial precursor 234 1e-61
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 246 bits (629), Expect = 1e-65
Identities = 117/159 (73%), Positives = 140/159 (88%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++
Sbjct: 257 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQ 316
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
+ +G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP+ P+FK+
Sbjct: 317 KEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKL 376
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
V+QLY+IVP+VL ++ K NP+PNVDAHSGVLLQYYGMT
Sbjct: 377 VAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMT 415
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 246 bits (627), Expect = 3e-65
Identities = 117/159 (73%), Positives = 139/159 (87%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++
Sbjct: 257 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQ 316
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
+ +G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+
Sbjct: 317 KEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKL 376
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
V+QLY+IVP+VL ++ K NP+PNVDAHSGVLLQYYGMT
Sbjct: 377 VAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMT 415
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 245 bits (626), Expect = 3e-65
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++
Sbjct: 257 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQ 316
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
+ +G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+
Sbjct: 317 KEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDPMFKL 376
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
V+QLY+IVP++L ++ K NP+PNVDAHSGVLLQYYGMT
Sbjct: 377 VAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGMT 415
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial precursor
Length = 433
Score = 241 bits (616), Expect = 5e-64
Identities = 111/159 (69%), Positives = 137/159 (86%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LY+TIHSDHEGGNVSAH HLVGSALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++
Sbjct: 225 LYVTIHSDHEGGNVSAHAGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKLVV 284
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
E G + + + +++ KTL +G+VVPGYGH VLRKTDPRY+CQREFALKHLPD PLF++
Sbjct: 285 EECGESISKEQLKDYVWKTLNSGKVVPGYGHGVLRKTDPRYICQREFALKHLPDDPLFQL 344
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
VS+LY++VP +L + K+ NP+PNVDAHSGVLL YYG+T
Sbjct: 345 VSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNYYGLT 383
>sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial precursor
Length = 474
Score = 241 bits (616), Expect = 5e-64
Identities = 111/159 (69%), Positives = 137/159 (86%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LY+TIHSDHEGGNVSAHT HLVGSALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++
Sbjct: 264 LYITIHSDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 323
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
E G + + + E++ KTL +G+V+PGYGH VLR TDPRY+CQREFALKHLPD PLF++
Sbjct: 324 EECGEDISKEQLKEYVWKTLNSGKVIPGYGHGVLRNTDPRYVCQREFALKHLPDDPLFQL 383
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
VS+LY++VP VL + K+ NP+PNVDAHSGVLL +YG+T
Sbjct: 384 VSKLYEVVPPVLTELGKVKNPWPNVDAHSGVLLNHYGLT 422
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 239 bits (610), Expect = 2e-63
Identities = 116/159 (72%), Positives = 134/159 (84%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LYLTIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL W+ ++
Sbjct: 230 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQ 289
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
+ D + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+
Sbjct: 290 KAXXXAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKL 349
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
V+QLY+IVP+VL ++ ANP+PNVDAHSGVLLQYYGMT
Sbjct: 350 VAQLYKIVPNVLLEQGAAANPWPNVDAHSGVLLQYYGMT 388
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 238 bits (606), Expect = 7e-63
Identities = 114/159 (71%), Positives = 136/159 (85%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LYL IHSDHEGGNVSAHT HLVGSALSDPYLS++AAM GLAGPLHGLANQEVL+++ K++
Sbjct: 259 LYLVIHSDHEGGNVSAHTSHLVGSALSDPYLSFSAAMAGLAGPLHGLANQEVLVFLNKIV 318
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
IG T++ + E++ K LK+GQVVPGYGHAVLRKTDPRY CQREFALKHLP+ LFK+
Sbjct: 319 GEIGFNYTEEQLKEWVWKHLKSGQVVPGYGHAVLRKTDPRYECQREFALKHLPNDDLFKL 378
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
VS LY+I P +L ++ K NP+PNVD+HSGVLLQY+GMT
Sbjct: 379 VSTLYKITPGILLEQGKAKNPWPNVDSHSGVLLQYFGMT 417
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
Length = 472
Score = 235 bits (600), Expect = 3e-62
Identities = 108/159 (67%), Positives = 134/159 (84%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LY+TIH+DHEGGNVSAHT HLV SALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++
Sbjct: 264 LYVTIHTDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVV 323
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
G T + + ++I KTL +G+VVPGYGH VLR TDPRY+CQREFALKHLPD PLF++
Sbjct: 324 SECGENVTKEQLKDYIWKTLNSGKVVPGYGHGVLRNTDPRYICQREFALKHLPDDPLFQL 383
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
VS L+++VP +L + K+ NP+PNVDAHSGVLL +YG+T
Sbjct: 384 VSNLFEVVPPILTELGKVKNPWPNVDAHSGVLLNHYGLT 422
>sp|P49298|CISY_CITMA Citrate synthase, mitochondrial precursor
Length = 471
Score = 234 bits (598), Expect = 6e-62
Identities = 107/158 (67%), Positives = 134/158 (84%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LY+TIHSDHEGGNVSAHT HLV SALSDPYLS+ AA+ GLAGPLHGLANQEVLLW++ ++
Sbjct: 263 LYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFLAALNGLAGPLHGLANQEVLLWIKSVV 322
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
+ G T + + +++ KTL +G+VVPG+GH VLRKTDPRY CQREFALKHLPD PLF++
Sbjct: 323 DECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQL 382
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGM 475
VS+LY++VP +L K K+ NP+PNVDAHSGVLL ++G+
Sbjct: 383 VSKLYEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGL 420
>sp|P83372|CISY_FRAAN Citrate synthase, mitochondrial precursor
Length = 469
Score = 234 bits (596), Expect = 1e-61
Identities = 107/159 (67%), Positives = 134/159 (84%)
Frame = +2
Query: 2 LYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMI 181
LY+TIHSDHEGGNVSAHT HLV SALSDP+LS+AAA+ GLAGPLHGLANQEVLLW++ ++
Sbjct: 260 LYVTIHSDHEGGNVSAHTGHLVASALSDPFLSFAAALNGLAGPLHGLANQEVLLWIKSVV 319
Query: 182 EVIGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKV 361
+ G T + +++ KTL +G+VVPG+GH VLRKTDPRY CQREFALKHLPD PLF++
Sbjct: 320 DECGENITKDQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFRL 379
Query: 362 VSQLYQIVPDVLGKKSKIANPFPNVDAHSGVLLQYYGMT 478
VS+LY +VP +L + K+ NP+PNVDAHSGVLL ++G+T
Sbjct: 380 VSKLYDVVPPILTELGKVKNPWPNVDAHSGVLLNHFGLT 418
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,139,282
Number of Sequences: 369166
Number of extensions: 1212324
Number of successful extensions: 3789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3694
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)