Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J20
(704 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91060|TBA_NOTVI Tubulin alpha chain 355 5e-98
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 355 6e-98
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 355 8e-98
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 354 1e-97
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 354 1e-97
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 354 1e-97
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 353 2e-97
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 353 2e-97
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 353 2e-97
sp|P52273|TBA_BOMMO Tubulin alpha chain 353 2e-97
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 355 bits (912), Expect = 5e-98
Identities = 167/173 (96%), Positives = 172/173 (99%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 355 bits (911), Expect = 6e-98
Identities = 167/173 (96%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEP NQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKRSIQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 355 bits (910), Expect = 8e-98
Identities = 167/173 (96%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 354 bits (908), Expect = 1e-97
Identities = 166/173 (95%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKRSIQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 354 bits (908), Expect = 1e-97
Identities = 166/173 (95%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKRSIQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 354 bits (908), Expect = 1e-97
Identities = 165/173 (95%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPL TY+P+ISAEKAYHEQLSVSEITNACFEP+NQMVKCDPRHGKYMACCMLY
Sbjct: 135 VPYPRIHFPLVTYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLY 194
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 195 RGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 254
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 255 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 353 bits (907), Expect = 2e-97
Identities = 166/173 (95%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQL+VSEITNACFEP NQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 353 bits (907), Expect = 2e-97
Identities = 166/173 (95%), Positives = 171/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPLATYAPVISAEKAYHEQLSV+EITNACFEP NQ+VKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 353 bits (906), Expect = 2e-97
Identities = 166/173 (95%), Positives = 170/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPL TYAPVISAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 353 bits (906), Expect = 2e-97
Identities = 166/173 (95%), Positives = 170/173 (98%)
Frame = +1
Query: 1 VPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPNNQMVKCDPRHGKYMACCMLY 180
VPYPRIHFPL TYAPVISAEKAYHEQLSV+EITNACFEP NQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 181 RGDVVPKDVNAAIASIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRALCMLS 360
RGDVVPKDVNAAIA+IKTKR+IQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRA+CMLS
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 379
Query: 361 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 519
NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,101,440
Number of Sequences: 369166
Number of extensions: 1502509
Number of successful extensions: 4273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4041
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)