Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J18
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BTX7|CT121_HUMAN Protein C20orf121 101 3e-21
sp|Q9D3D0|CT121_MOUSE Protein C20orf121 homolog 99 2e-20
sp|P41034|TTPA_RAT Alpha-tocopherol transfer protein (Alpha... 81 4e-15
sp|Q8BWP5|TTPA_MOUSE Alpha-tocopherol transfer protein (Alp... 79 2e-14
sp|P49638|TTPA_HUMAN Alpha-tocopherol transfer protein (Alp... 78 3e-14
sp|P10123|CRAL_BOVIN Cellular retinaldehyde-binding protein... 72 2e-12
sp|Q9Z275|CRAL_MOUSE Cellular retinaldehyde-binding protein... 71 3e-12
sp|P12271|CRAL_HUMAN Cellular retinaldehyde-binding protein... 70 7e-12
sp|Q9UDX3|S144_HUMAN SEC14-like protein 4 (Tocopherol-assoc... 40 0.011
sp|Q9M0R2|PATL5_ARATH Patellin-5 38 0.041
>sp|Q9BTX7|CT121_HUMAN Protein C20orf121
Length = 342
Score = 101 bits (251), Expect = 3e-21
Identities = 74/226 (32%), Positives = 112/226 (49%), Gaps = 4/226 (1%)
Frame = +1
Query: 175 ISEHSKAAAIRELNENPLQVNAHIDSFRRWL-KSIPHIKCPTNSKFLLRFLRVSKFNHEK 351
++E A EL E P + + R + K P++ + FLLRFLR KF++++
Sbjct: 35 LTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDR 94
Query: 352 AQNRLDNFCTVRSSTKGSPEFF---KFFSIDDEAVQSFLKLKMHVPLGRNDAGEIVFLIR 522
A L N+ + R S PE F K ++ D FL + H + G V IR
Sbjct: 95 ALQLLVNYHSCRRSW---PEVFNNLKPSALKDVLASGFLTVLPHT----DPRGCHVVCIR 147
Query: 523 ASVWDPDKIPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEPKLLK 702
W P P+T+ I I++ L+ LI EE+Q++GI IL D +S + P + K
Sbjct: 148 PDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFG-PFIAK 206
Query: 703 QWHKIIQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNRTF 840
+ I+Q+ +PIR+K NEP +F +F +I F+ EKI NR F
Sbjct: 207 KVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRFF 252
>sp|Q9D3D0|CT121_MOUSE Protein C20orf121 homolog
Length = 343
Score = 99.0 bits (245), Expect = 2e-20
Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 4/226 (1%)
Frame = +1
Query: 175 ISEHSKAAAIRELNENPLQVNAHIDSFRRWL-KSIPHIKCPTNSKFLLRFLRVSKFNHEK 351
++E A EL E P + + R + K P++ + FLLRFLR KF++++
Sbjct: 36 LTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPYLSTSLDDAFLLRFLRARKFDYDR 95
Query: 352 AQNRLDNFCTVRSSTKGSPEFFKFF---SIDDEAVQSFLKLKMHVPLGRNDAGEIVFLIR 522
A L N+ R S PE F ++ D FL + H + G V IR
Sbjct: 96 ALQLLVNYHGCRRSW---PEVFSNLRPSALKDVLNSGFLTVLPHT----DPRGCHVLCIR 148
Query: 523 ASVWDPDKIPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEPKLLK 702
W P P+T+ I +++ L+ LI EE+Q++GI IL D +S + P + K
Sbjct: 149 PDRWIPSNYPITENIRAVYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFG-PFIAK 207
Query: 703 QWHKIIQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNRTF 840
+ I+Q+ +PIR+K NEP +F +F +I F+ EKI NR F
Sbjct: 208 KVIGILQDGFPIRIKAVHIVNEPRIFKGIFAIIKPFLKEKIANRFF 253
>sp|P41034|TTPA_RAT Alpha-tocopherol transfer protein (Alpha-TTP)
Length = 278
Score = 80.9 bits (198), Expect = 4e-15
Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 13/223 (5%)
Frame = +1
Query: 205 RELNENPLQ---VNAHIDSFRRWLKS--IPHIKCPTNSKFLLRFLRVSKFNHEKAQNRLD 369
++LNE P V + RR + +P P FLLRFLR F+ + A +
Sbjct: 12 KQLNEQPDHSPLVQPGLAELRRRAQEEGVPETPQPLTDAFLLRFLRARDFDLDLAWRLMK 71
Query: 370 NFCTVRSSTKGSPEFFKFFSIDDEAVQSFLKLKMHVPL-GRNDAGEIVFLIRASVWDPDK 546
N+ R+ PE + ++ LK H L R+ G V + R S WDP
Sbjct: 72 NYYKWRAEC---PELSA--DLHPRSILGLLKAGYHGVLRSRDPTGSRVLIYRISYWDPKV 126
Query: 547 IPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWA-------EPKLLKQ 705
+ + + ++++ E E+Q +G+K + DL E W P + K+
Sbjct: 127 FTAYDVFRVSLITSELIVQEVETQRNGVKAIFDL--------EGWQISHAFQITPSVAKK 178
Query: 706 WHKIIQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNR 834
++ +S+P++++G NEP++F VF +I F+ EKIK R
Sbjct: 179 IAAVVTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKGR 221
>sp|Q8BWP5|TTPA_MOUSE Alpha-tocopherol transfer protein (Alpha-TTP)
Length = 278
Score = 78.6 bits (192), Expect = 2e-14
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 8/195 (4%)
Frame = +1
Query: 274 IPHIKCPTNSKFLLRFLRVSKFNHEKAQNRLDNFCTVRSSTKGSPEFFKFFSIDDEAVQS 453
+P P FLLRFLR F+ + A + N+ R+ PE + ++
Sbjct: 40 VPQTPQPLTDAFLLRFLRARDFDLDLAWRLMKNYYKWRAEC---PELSA--DLRPRSILG 94
Query: 454 FLKLKMHVPL-GRNDAGEIVFLIRASVWDPDKIPLTKLIVLIFMGLDILISEEESQIHGI 630
LK H L R+ G V + R + WDP + + + ++++ E E+Q +G+
Sbjct: 95 LLKAGYHGVLRSRDSTGSRVLIYRIAYWDPKVFTAYDVFRVSLITSELIVQEVETQRNGV 154
Query: 631 KILIDLIDISRKSMEAWA-------EPKLLKQWHKIIQESYPIRLKGQIFYNEPMLFDIV 789
K + DL E W P + K+ ++ +S+P++++G NEP++F V
Sbjct: 155 KAIFDL--------EGWQVSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAV 206
Query: 790 FDVISIFMNEKIKNR 834
F +I F+ EKIK+R
Sbjct: 207 FSMIKPFLTEKIKDR 221
>sp|P49638|TTPA_HUMAN Alpha-tocopherol transfer protein (Alpha-TTP)
Length = 278
Score = 78.2 bits (191), Expect = 3e-14
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 8/195 (4%)
Frame = +1
Query: 274 IPHIKCPTNSKFLLRFLRVSKFNHEKAQNRLDNFCTVRSSTKGSPEFFKFFSIDDEAVQS 453
+P P FLLRFLR F+ + A L N+ R+ PE + ++
Sbjct: 40 VPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC---PEISA--DLHPRSIIG 94
Query: 454 FLKLKMHVPL-GRNDAGEIVFLIRASVWDPDKIPLTKLIVLIFMGLDILISEEESQIHGI 630
LK H L R+ G V + R + WDP + + + ++++ E E+Q +GI
Sbjct: 95 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGI 154
Query: 631 KILIDLIDISRKSMEAWA-------EPKLLKQWHKIIQESYPIRLKGQIFYNEPMLFDIV 789
K + DL E W P + K+ ++ +S+P++++G NEP++F V
Sbjct: 155 KAIFDL--------EGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAV 206
Query: 790 FDVISIFMNEKIKNR 834
F +I F+ EKIK R
Sbjct: 207 FSMIKPFLTEKIKER 221
>sp|P10123|CRAL_BOVIN Cellular retinaldehyde-binding protein (CRALBP)
Length = 317
Score = 72.0 bits (175), Expect = 2e-12
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 1/221 (0%)
Frame = +1
Query: 181 EHSKAAAIRELNENPLQVNAHIDSFRRWLKSIPHIKCPTNSKFLLRFLRVSKFNHEKAQN 360
E ++ A+REL E V A S + ++ +S F LRF+R KF+ +A
Sbjct: 56 EETREEAVRELQE---LVQAEAASGQELAVAVAERVQGKDSAFFLRFIRARKFHVGRAYE 112
Query: 361 RLDNFCTVRSSTKGSPEFFKFFSIDDEAVQSFLKLKMHVPLGRNDA-GEIVFLIRASVWD 537
L + R PE F S+ EAV+ ++ L D G +V L WD
Sbjct: 113 LLRGYVNFRLQ---YPELFD--SLSPEAVRCTVEAGYPGVLSTRDKYGRVVMLFIIENWD 167
Query: 538 PDKIPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEPKLLKQWHKI 717
++I +++ + L+ L+ EE+QI+G I+ + + + A P L++ +
Sbjct: 168 SEEITFDEILQAYCVILEKLLENEETQINGFCIIENFKGFTMQ-QAAGLRPSDLRKMVDM 226
Query: 718 IQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNRTF 840
+Q+S+P R K F +P F ++V+ F+ K+ R F
Sbjct: 227 LQDSFPARFKAIHFIYQPWYFTTTYNVVKPFLKSKLLQRVF 267
>sp|Q9Z275|CRAL_MOUSE Cellular retinaldehyde-binding protein (CRALBP)
Length = 317
Score = 71.2 bits (173), Expect = 3e-12
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 1/221 (0%)
Frame = +1
Query: 181 EHSKAAAIRELNENPLQVNAHIDSFRRWLKSIPHIKCPTNSKFLLRFLRVSKFNHEKAQN 360
E ++ A+REL E V A S ++ +S FLLRF+R KF+ +A
Sbjct: 56 EETREEAVRELQE---LVQAQAASGEELALAVAERVQARDSAFLLRFIRARKFDVGRAYE 112
Query: 361 RLDNFCTVRSSTKGSPEFFKFFSIDDEAVQSFLKLKMHVPLGRNDA-GEIVFLIRASVWD 537
L + R PE F S+ EA++ ++ L D G +V L W
Sbjct: 113 LLKGYVNFRLQ---YPELFD--SLSMEALRCTIEAGYPGVLSSRDKYGRVVMLFNIENWH 167
Query: 538 PDKIPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEPKLLKQWHKI 717
+++ +++ L+ L+ EE+QI+G I+ + + + A P LK+ +
Sbjct: 168 CEEVTFDEILQAYCFILEKLLENEETQINGFCIVENFKGFTMQ-QAAGLRPSDLKKMVDM 226
Query: 718 IQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNRTF 840
+Q+S+P R K F ++P F ++V+ F+ K+ R F
Sbjct: 227 LQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVF 267
>sp|P12271|CRAL_HUMAN Cellular retinaldehyde-binding protein (CRALBP)
Length = 317
Score = 70.1 bits (170), Expect = 7e-12
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 1/221 (0%)
Frame = +1
Query: 181 EHSKAAAIRELNENPLQVNAHIDSFRRWLKSIPHIKCPTNSKFLLRFLRVSKFNHEKAQN 360
E ++ A+REL E V A S ++ +S F LRF+R KFN +A
Sbjct: 56 EETREEAVRELQE---MVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYE 112
Query: 361 RLDNFCTVRSSTKGSPEFFKFFSIDDEAVQSFLKLKMHVPLGRNDA-GEIVFLIRASVWD 537
L + R PE F S+ EAV+ ++ L D G +V L W
Sbjct: 113 LLRGYVNFRLQ---YPELFD--SLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQ 167
Query: 538 PDKIPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEPKLLKQWHKI 717
+I +++ L+ L+ EE+QI+G I+ + + + A L++ +
Sbjct: 168 SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQ-QAASLRTSDLRKMVDM 226
Query: 718 IQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNRTF 840
+Q+S+P R K F ++P F ++V+ F+ K+ R F
Sbjct: 227 LQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVF 267
>sp|Q9UDX3|S144_HUMAN SEC14-like protein 4 (Tocopherol-associated protein 3)
Length = 406
Score = 39.7 bits (91), Expect = 0.011
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 14/208 (6%)
Frame = +1
Query: 253 FRRWLKSIPHIKCPTNSKFLLRFLRVSKFNHEKAQNRLDNFCTVRSS-------TKGSPE 411
FR L+ + I + FLLR+LR F+ +K+++ L R T PE
Sbjct: 19 FRENLQDLLPILPNADDYFLLRWLRARNFDLQKSEDMLRRHMEFRKQQDLDNIVTWQPPE 78
Query: 412 FFKFFS------IDDEAVQSFLKLKMHVPLGRNDAGEIVFLIRASVWDPDKIPLTKLIVL 573
+ + D E + + +G D + L+ AS D + + K+ L
Sbjct: 79 VIQLYDSGGLCGYDYEGCPVYFNI-----IGSLDPKGL--LLSASKQDMIRKRI-KVCEL 130
Query: 574 IFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEP-KLLKQWHKIIQESYPIRLKG 750
+ ++ + +I ++ D+ +S K + W ++ +Q+ I++ +YP LK
Sbjct: 131 LLHECELQTQKLGRKIEMALMVFDMEGLSLKHL--WKPAVEVYQQFFSILEANYPETLKN 188
Query: 751 QIFYNEPMLFDIVFDVISIFMNEKIKNR 834
I P LF + F+++ FM+E+ + +
Sbjct: 189 LIVIRAPKLFPVAFNLVKSFMSEETRRK 216
>sp|Q9M0R2|PATL5_ARATH Patellin-5
Length = 668
Score = 37.7 bits (86), Expect = 0.041
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 7/225 (3%)
Frame = +1
Query: 181 EHSKAAAIRELNENPLQVNAHI-----DSFRRWLKSIPHIKCPTNSKFLLRFLRVSKFNH 345
E +K + + E N LQ H+ DS + + +P +K LL+FLR F
Sbjct: 294 ETNKISDLSETELNALQELRHLLQVSQDSSKTSIWGVPLLKDDRTDVVLLKFLRARDFKP 353
Query: 346 EKAQNRLDNFCTVRSSTKGSPEFFKFFSID-DEAVQSFLKLKMHVPLGRNDAGEIVFLIR 522
++A + L+ R + D D+ V + K + P+ N GE
Sbjct: 354 QEAYSMLNKTLQWRIDFNIEELLDENLGDDLDKVVFMQGQDKENHPVCYNVYGEFQNKDL 413
Query: 523 ASVWDPDKIPLTKLIVLIFMGLDILISEEESQIHGIKILIDLIDISRKSMEAWAEPKLL- 699
D+ + + L+ I + G+ + + D+ E +L
Sbjct: 414 YQKTFSDEEKRERFLRWRIQFLEKSIRNLDFVAGGVSTICQVNDLKNSPGPGKTELRLAT 473
Query: 700 KQWHKIIQESYPIRLKGQIFYNEPMLFDIVFDVISIFMNEKIKNR 834
KQ ++Q++YP + QIF N P + + +IS FM+++ K++
Sbjct: 474 KQALHLLQDNYPEFVSKQIFINVPWWYLAFYRIISPFMSQRSKSK 518
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,516,221
Number of Sequences: 369166
Number of extensions: 1580548
Number of successful extensions: 3557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3547
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)