Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J16
(259 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5E947|PRDX1_BOVIN Peroxiredoxin 1 101 5e-22
sp|P32119|PRDX2_HUMAN Peroxiredoxin 2 (Thioredoxin peroxida... 101 6e-22
sp|Q06830|PRDX1_HUMAN Peroxiredoxin 1 (Thioredoxin peroxida... 101 6e-22
sp|Q61171|PRDX2_MOUSE Peroxiredoxin 2 (Thioredoxin peroxida... 101 6e-22
sp|P35704|PRDX2_RAT Peroxiredoxin 2 (Thioredoxin peroxidase... 101 6e-22
sp|Q90384|TDX_CYNPY Peroxiredoxin (Thioredoxin peroxidase) ... 100 1e-21
sp|Q9BGI3|PRDX2_BOVIN Peroxiredoxin 2 99 2e-21
sp|Q63716|PRDX1_RAT Peroxiredoxin 1 (Thioredoxin peroxidase... 97 9e-21
sp|P35700|PRDX1_MOUSE Peroxiredoxin 1 (Thioredoxin peroxida... 97 1e-20
sp|Q91191|TDX_ONCMY Peroxiredoxin (Thioredoxin peroxidase) ... 94 7e-20
>sp|Q5E947|PRDX1_BOVIN Peroxiredoxin 1
Length = 199
Score = 101 bits (252), Expect = 5e-22
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+TIND+PVGRS+DETLRLVQAFQ TD HGEVCPAGWKPGS TIKP +Q + EYF
Sbjct: 138 ILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYF 195
>sp|P32119|PRDX2_HUMAN Peroxiredoxin 2 (Thioredoxin peroxidase 1) (Thioredoxin-dependent
peroxide reductase 1) (Thiol-specific antioxidant
protein) (TSA) (PRP) (Natural killer cell-enhancing
factor B) (NKEF-B)
Length = 198
Score = 101 bits (251), Expect = 6e-22
Identities = 43/58 (74%), Positives = 52/58 (89%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+T+ND+PVGRS+DE LRLVQAFQ+TD HGEVCPAGWKPGS TIKP + D+ EYF
Sbjct: 137 VLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYF 194
>sp|Q06830|PRDX1_HUMAN Peroxiredoxin 1 (Thioredoxin peroxidase 2) (Thioredoxin-dependent
peroxide reductase 2) (Proliferation-associated protein
PAG) (Natural killer cell-enhancing factor A) (NKEF-A)
Length = 199
Score = 101 bits (251), Expect = 6e-22
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+T+ND+PVGRS+DETLRLVQAFQ TD HGEVCPAGWKPGS TIKP +Q + EYF
Sbjct: 138 ILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYF 195
>sp|Q61171|PRDX2_MOUSE Peroxiredoxin 2 (Thioredoxin peroxidase 1) (Thioredoxin-dependent
peroxide reductase 1) (Thiol-specific antioxidant
protein) (TSA)
Length = 198
Score = 101 bits (251), Expect = 6e-22
Identities = 43/58 (74%), Positives = 52/58 (89%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+T+ND+PVGRS+DE LRLVQAFQ+TD HGEVCPAGWKPGS TIKP + D+ EYF
Sbjct: 137 VLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYF 194
>sp|P35704|PRDX2_RAT Peroxiredoxin 2 (Thioredoxin peroxidase 1) (Thioredoxin-dependent
peroxide reductase 1) (Thiol-specific antioxidant
protein) (TSA)
Length = 198
Score = 101 bits (251), Expect = 6e-22
Identities = 43/58 (74%), Positives = 52/58 (89%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+T+ND+PVGRS+DE LRLVQAFQ+TD HGEVCPAGWKPGS TIKP + D+ EYF
Sbjct: 137 VLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYF 194
>sp|Q90384|TDX_CYNPY Peroxiredoxin (Thioredoxin peroxidase) (Thioredoxin-dependent
peroxide reductase) (Animal blastomere protein, 25 kDa)
(ABP-25)
Length = 200
Score = 100 bits (248), Expect = 1e-21
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+TIND+PVGRS+DETLRLVQAFQHTD GEVCPAGWKPGS TIKP I + EYF
Sbjct: 138 ILRQITINDLPVGRSVDETLRLVQAFQHTDKFGEVCPAGWKPGSDTIKPDISKSKEYF 195
>sp|Q9BGI3|PRDX2_BOVIN Peroxiredoxin 2
Length = 199
Score = 99.4 bits (246), Expect = 2e-21
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+TIND+PVGRS+DE LRLVQAFQ+TD HGEVCPAGW PGS TIKP + D+ EYF
Sbjct: 138 VLRQVTINDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWTPGSDTIKPNVDDSKEYF 195
>sp|Q63716|PRDX1_RAT Peroxiredoxin 1 (Thioredoxin peroxidase 2) (Thioredoxin-dependent
peroxide reductase 2) (Heme-binding 23 kDa protein)
(HBP23)
Length = 199
Score = 97.4 bits (241), Expect = 9e-21
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+TIND+PVGRS+DE LRLVQAFQ TD HGEVCPAGWKPGS TIKP + + EYF
Sbjct: 138 ILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYF 195
>sp|P35700|PRDX1_MOUSE Peroxiredoxin 1 (Thioredoxin peroxidase 2) (Thioredoxin-dependent
peroxide reductase 2) (Osteoblast-specific factor 3)
(OSF-3) (Macrophage 23 kDa stress protein)
Length = 199
Score = 96.7 bits (239), Expect = 1e-20
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+TIND+PVGRS+DE +RLVQAFQ TD HGEVCPAGWKPGS TIKP + + EYF
Sbjct: 138 ILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYF 195
>sp|Q91191|TDX_ONCMY Peroxiredoxin (Thioredoxin peroxidase) (Thioredoxin-dependent
peroxide reductase) (Natural killer enhancement
factor-like protein) (RBT-NKEF)
Length = 200
Score = 94.4 bits (233), Expect = 7e-20
Identities = 41/58 (70%), Positives = 50/58 (86%)
Frame = +2
Query: 2 LIRQMTINDMPVGRSIDETLRLVQAFQHTDIHGEVCPAGWKPGSKTIKPTIQDAGEYF 175
++RQ+TIND+PVGR +DE LRLVQAFQ TD HGEVCPAGWKPGS TIKP +Q + ++F
Sbjct: 139 VLRQITINDLPVGRCVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKDFF 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,880,570
Number of Sequences: 369166
Number of extensions: 661907
Number of successful extensions: 2030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)