Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J12
(881 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ET22|DPP2_MOUSE Dipeptidyl-peptidase II precursor (DPP... 262 1e-69
sp|Q9EPB1|DPP2_RAT Dipeptidyl-peptidase II precursor (DPP I... 255 1e-67
sp|Q9UHL4|DPP2_HUMAN Dipeptidyl-peptidase II precursor (DPP... 243 5e-64
sp|Q7TMR0|PCP_MOUSE Lysosomal Pro-X carboxypeptidase precur... 221 2e-57
sp|Q5RBU7|PCP_PONPY Lysosomal Pro-X carboxypeptidase precur... 221 3e-57
sp|P42785|PCP_HUMAN Lysosomal Pro-X carboxypeptidase precur... 220 5e-57
sp|P34610|PCP1_CAEEL Putative serine protease pcp-1 precursor 180 4e-45
sp|P34676|YO26_CAEEL Putative serine protease Z688.6 precursor 169 1e-41
sp|P34528|YM67_CAEEL Putative serine protease K12H4.7 precu... 105 1e-22
sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 prec... 103 6e-22
>sp|Q9ET22|DPP2_MOUSE Dipeptidyl-peptidase II precursor (DPP II) (Dipeptidyl
aminopeptidase II) (Quiescent cell proline dipeptidase)
(Dipeptidyl peptidase 7)
Length = 506
Score = 262 bits (669), Expect = 1e-69
Identities = 144/294 (48%), Positives = 194/294 (65%), Gaps = 1/294 (0%)
Frame = +1
Query: 1 EQILDHFNFLSVQRGYTTKFKQRFLYEDKWYKPG-GPLFFYCGNEGSIEGFWNNTGLMFE 177
EQ +DHFNF S G T F QRFL DK++K G GP+FFY GNEG I F NN+G M E
Sbjct: 47 EQYMDHFNFESF--GNKT-FGQRFLVSDKFWKMGEGPIFFYTGNEGDIWSFANNSGFMVE 103
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKAA 357
LA + AL+VF EHRYYG SLPFGV +S ++ Y Q L+VEQALADF ++ ++ L
Sbjct: 104 LAAQQEALLVFAEHRYYGKSLPFGV-QSTQRGYTQLLTVEQALADFAVLLQALRQDLGVH 162
Query: 358 NSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFREE 537
++ IAFGGSYGG L+AY+R KYP++V G+LAASAP+ V+G ++FF +T DF +
Sbjct: 163 DAPTIAFGGSYGGMLSAYMRMKYPHLVAGALAASAPVVAVAGLGDSYQFFRDVTADFYGQ 222
Query: 538 NAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVMLA 717
+ +C V+D F Q++ L QG + IS+ TC+ L+S D+ + RN F +LA
Sbjct: 223 SPKCAQAVRDAFQQIKDLFLQG--AYDTISQNFGTCQSLSSPKDLTQLFGFARNAFTVLA 280
Query: 718 MMDYPYATNFMGNLPAHPVRVACQNILANKDNSIVALREAGAVYYNTSQTSTCF 879
MMDYPY T+F+G LPA+PV+V CQ +L N+ I+ LR + YN+S T C+
Sbjct: 281 MMDYPYPTDFLGPLPANPVKVGCQRLL-NEGQRIMGLRALAGLVYNSSGTEPCY 333
>sp|Q9EPB1|DPP2_RAT Dipeptidyl-peptidase II precursor (DPP II) (Dipeptidyl
aminopeptidase II) (Quiescent cell proline dipeptidase)
(Dipeptidyl peptidase 7)
Length = 500
Score = 255 bits (651), Expect = 1e-67
Identities = 139/294 (47%), Positives = 189/294 (64%), Gaps = 1/294 (0%)
Frame = +1
Query: 1 EQILDHFNFLSVQRGYTTKFKQRFLYEDKWYKPG-GPLFFYCGNEGSIEGFWNNTGLMFE 177
EQ +DHFNF S F QRFL DK++K G GP+FFY GNEG I NN+G + E
Sbjct: 47 EQYMDHFNFESFSN---KTFGQRFLVSDKFWKMGEGPIFFYTGNEGDIWSLANNSGFIVE 103
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKAA 357
LA + AL+VF EHRYYG SLPFGV +S ++ Y Q L+VEQALADF ++ ++ L
Sbjct: 104 LAAQQEALLVFAEHRYYGKSLPFGV-QSTQRGYTQLLTVEQALADFAVLLQALRHNLGVQ 162
Query: 358 NSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFREE 537
++ IAFGGSYGG L+AY+R KYP++V G+LAASAP+ V+G +FF +T DF +
Sbjct: 163 DAPTIAFGGSYGGMLSAYMRMKYPHLVAGALAASAPVIAVAGLGNPDQFFRDVTADFYGQ 222
Query: 538 NAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVMLA 717
+ +C V+D F Q++ L QG + IS+ TC+ L+S D+ + RN F +LA
Sbjct: 223 SPKCAQAVRDAFQQIKDLFLQG--AYDTISQNFGTCQSLSSPKDLTQLFGFARNAFTVLA 280
Query: 718 MMDYPYATNFMGNLPAHPVRVACQNILANKDNSIVALREAGAVYYNTSQTSTCF 879
MMDYPY TNF+G LPA+PV+V C+ +L ++ I+ LR + YN+S CF
Sbjct: 281 MMDYPYPTNFLGPLPANPVKVGCERLL-SEGQRIMGLRALAGLVYNSSGMEPCF 333
>sp|Q9UHL4|DPP2_HUMAN Dipeptidyl-peptidase II precursor (DPP II) (Dipeptidyl
aminopeptidase II) (Quiescent cell proline dipeptidase)
(Dipeptidyl peptidase 7)
Length = 492
Score = 243 bits (620), Expect = 5e-64
Identities = 130/294 (44%), Positives = 186/294 (63%), Gaps = 1/294 (0%)
Frame = +1
Query: 1 EQILDHFNFLSVQRGYTTKFKQRFLYEDK-WYKPGGPLFFYCGNEGSIEGFWNNTGLMFE 177
+Q LDHFNF +R F QRFL D+ W + GP+FFY GNEG + F NN+G + E
Sbjct: 37 QQRLDHFNF---ERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSGFVAE 93
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKAA 357
LA + AL+VF EHRYYG SLPFG ++S ++ + + L+VEQALADF ++ ++ L A
Sbjct: 94 LAAERGALLVFAEHRYYGKSLPFG-AQSTQRGHTELLTVEQALADFAELLRALRRDLGAQ 152
Query: 358 NSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFREE 537
++ IAFGGSYGG L+AY+R KYP++V G+LAASAP+ V+G ++FF +T DF +
Sbjct: 153 DAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQ 212
Query: 538 NAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVMLA 717
+ +C V++ F Q++ L QG + + TC+PL+ D+ + RN F +LA
Sbjct: 213 SPKCTQGVREAFRQIKDLFLQG--AYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLA 270
Query: 718 MMDYPYATNFMGNLPAHPVRVACQNILANKDNSIVALREAGAVYYNTSQTSTCF 879
MMDYPY T+F+G LPA+PV+V C +L+ I LR + YN S + C+
Sbjct: 271 MMDYPYPTDFLGPLPANPVKVGCDRLLSEAQR-ITGLRALAGLVYNASGSEHCY 323
>sp|Q7TMR0|PCP_MOUSE Lysosomal Pro-X carboxypeptidase precursor (Prolylcarboxypeptidase)
(PRCP) (Proline carboxypeptidase)
Length = 491
Score = 221 bits (564), Expect = 2e-57
Identities = 123/297 (41%), Positives = 177/297 (59%), Gaps = 5/297 (1%)
Frame = +1
Query: 1 EQILDHFNFLSVQRGYTTKFKQRFLYEDK-WYKPGGPLFFYCGNEGSIEGFWNNTGLMFE 177
EQ +DHF F ++ FKQR+L DK W + GG + FY GNEG I F NNTG M++
Sbjct: 52 EQKVDHFGFADMRT-----FKQRYLVADKHWQRNGGSILFYTGNEGDIVWFCNNTGFMWD 106
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKAA 357
+A + A++VF EHRYYG SLPFG ++ +L+ EQALADF +I H++ + A
Sbjct: 107 VAEELKAMLVFAEHRYYGESLPFGQDSFKDSQHLNFLTSEQALADFAELIRHLEKTIPGA 166
Query: 358 NSK-VIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFRE 534
+ VIA GGSYGG LAA+ R KYP++V+G+LAASAPI + G +F +++T DFR+
Sbjct: 167 QGQPVIAIGGSYGGMLAAWFRMKYPHIVVGALAASAPIWQLDGMVPCGEFMKIVTNDFRK 226
Query: 535 ENAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVML 714
C + ++ + + L+ G G Q ++ L C PLTS + W+ +V L
Sbjct: 227 SGPYCSESIRKSWNVIDKLSGSGS-GLQSLTNILHLCSPLTS-EKIPTLKGWIAETWVNL 284
Query: 715 AMMDYPYATNFMGNLPAHPVRVACQNILANKDNSIVALR---EAGAVYYNTSQTSTC 876
AM++YPYA NF+ LPA P++ CQ + + V L+ +A +VYYN S + C
Sbjct: 285 AMVNYPYACNFLQPLPAWPIKEVCQYLKNPNVSDTVLLQNIFQALSVYYNYSGQAAC 341
>sp|Q5RBU7|PCP_PONPY Lysosomal Pro-X carboxypeptidase precursor (Prolylcarboxypeptidase)
(PRCP) (Proline carboxypeptidase)
Length = 496
Score = 221 bits (562), Expect = 3e-57
Identities = 126/297 (42%), Positives = 179/297 (60%), Gaps = 5/297 (1%)
Frame = +1
Query: 1 EQILDHFNFLSVQRGYTTKFKQRFLYEDK-WYKPGGPLFFYCGNEGSIEGFWNNTGLMFE 177
+Q +DHF F +V+ F QR+L DK W K GG + FY GNEG I F NNTG M++
Sbjct: 54 QQKVDHFGFNTVKT-----FNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWD 108
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKAA 357
+A + A++VF EHRYYG SLPFG + ++ +L+ EQALADF +I H++ + A
Sbjct: 109 VAEELKAMLVFAEHRYYGESLPFGDNTFKDSRHLNFLTSEQALADFAELIKHLKRTIPGA 168
Query: 358 -NSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFRE 534
N VIA GGSYGG LAA+ R KYP++V+G+LAASAPI F +++T DFR+
Sbjct: 169 ENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRK 228
Query: 535 ENAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVML 714
C + ++ + + L+ G G Q ++ L C PLTS D+ + W+ +V L
Sbjct: 229 SGPHCSESIRRSWDAINRLSNTGS-GLQWLTGALHLCSPLTS-QDIQHLKDWISETWVNL 286
Query: 715 AMMDYPYATNFMGNLPAHPVRVACQNIL-ANKDNSIVA--LREAGAVYYNTSQTSTC 876
AM+DYPYA+NF+ LPA P++V CQ + N +S++ + +A VYYN S C
Sbjct: 287 AMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKC 343
>sp|P42785|PCP_HUMAN Lysosomal Pro-X carboxypeptidase precursor (Prolylcarboxypeptidase)
(PRCP) (Proline carboxypeptidase) (Angiotensinase C)
(Lysosomal carboxypeptidase C)
Length = 496
Score = 220 bits (560), Expect = 5e-57
Identities = 126/297 (42%), Positives = 178/297 (59%), Gaps = 5/297 (1%)
Frame = +1
Query: 1 EQILDHFNFLSVQRGYTTKFKQRFLYEDK-WYKPGGPLFFYCGNEGSIEGFWNNTGLMFE 177
+Q +DHF F +V+ F QR+L DK W K GG + FY GNEG I F NNTG M++
Sbjct: 54 QQKVDHFGFNTVKT-----FNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWD 108
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKAA 357
+A + A++VF EHRYYG SLPFG + ++ +L+ EQALADF +I H++ + A
Sbjct: 109 VAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGA 168
Query: 358 -NSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFRE 534
N VIA GGSYGG LAA+ R KYP++V+G+LAASAPI F +++T DFR+
Sbjct: 169 ENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRK 228
Query: 535 ENAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVML 714
C + + + + L+ G G Q ++ L C PLTS D+ + W+ +V L
Sbjct: 229 SGPHCSESIHRSWDAINRLSNTGS-GLQWLTGALHLCSPLTS-QDIQHLKDWISETWVNL 286
Query: 715 AMMDYPYATNFMGNLPAHPVRVACQNIL-ANKDNSIVA--LREAGAVYYNTSQTSTC 876
AM+DYPYA+NF+ LPA P++V CQ + N +S++ + +A VYYN S C
Sbjct: 287 AMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKC 343
>sp|P34610|PCP1_CAEEL Putative serine protease pcp-1 precursor
Length = 565
Score = 180 bits (457), Expect = 4e-45
Identities = 114/296 (38%), Positives = 164/296 (55%), Gaps = 14/296 (4%)
Frame = +1
Query: 10 LDHFNFLSVQRGYTTKFKQRFLYEDKWYKPGGPLFFYCGNEGSIEGFWNNTGLMFELAPK 189
LDHF + G T F R ++ + +YKPGGP+FFY GNEG +E F TG+MF+LAP
Sbjct: 51 LDHFTW-----GDTRTFDMRVMWNNTFYKPGGPIFFYTGNEGGLESFVTATGMMFDLAPM 105
Query: 190 FNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHV-----QGKLK- 351
FNA ++F EHR+YG + PFG + YL+ EQALAD+ ++ + Q K+
Sbjct: 106 FNASIIFAEHRFYGQTQPFGNQSYASLANVGYLTSEQALADYAELLTELKRDNNQFKMTF 165
Query: 352 AANSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFR 531
A ++VI+FGGSYGG L+A+ R KYP++V G+ A SAP+ +++GG F+ IT
Sbjct: 166 PAATQVISFGGSYGGMLSAWFRQKYPHIVKGAWAGSAPLIYMNGGGVDPGAFDHITSRTY 225
Query: 532 EENAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPLTSI---SDVNYAMKWLRNG 702
+N I+ + + L++ L + + P T I +D +LR
Sbjct: 226 IDNGCNRFILANAWNATLNLSSTDAGRQWLNNNTVFKLDPRTKIRNQTDGWNLNAYLREA 285
Query: 703 FVMLAMMDYPYATNFMGNLPAHPVRVACQNILAN----KDNSIV-ALREAGAVYYN 855
+AM+DYPY T F+ LPA PV VAC + AN D +V A+ A +YYN
Sbjct: 286 IEYMAMVDYPYPTGFLEPLPAWPVTVACGYMNANGTSFSDKDLVKAVANAANIYYN 341
>sp|P34676|YO26_CAEEL Putative serine protease Z688.6 precursor
Length = 507
Score = 169 bits (427), Expect = 1e-41
Identities = 101/280 (36%), Positives = 153/280 (54%), Gaps = 7/280 (2%)
Frame = +1
Query: 55 KFKQRFLYEDKWYKPGGPLFFYCGNEGSIEGFWNNTGLMFELAPKFNALVVFGEHRYYGV 234
+F R+ Y+ GGP+ FY GNEGS+E F NTG M++LAP+ A VVF EHR+YG
Sbjct: 60 EFDLRYFLNIDHYETGGPILFYTGNEGSLEAFAENTGFMWDLAPELKAAVVFVEHRFYGK 119
Query: 235 SLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQG-KLKAA-NSKVIAFGGSYGGCLAA 408
S PF ++ YLS +QALADF + + K+K A S VIAFGGSYGG L+A
Sbjct: 120 SQPFKNESYTDIRHLGYLSSQQALADFALSVQFFKNEKIKGAQKSAVIAFGGSYGGMLSA 179
Query: 409 YIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFE-VITKDFREENAQCVDIVKDGFGQMR 585
+ R KYP++V G++AASAP+ W + + ++ ++T+ F + I K
Sbjct: 180 WFRIKYPHIVDGAIAASAPVFWFTDSNIPEDVYDFIVTRAFLDAGCNRKAIEKGWIALDE 239
Query: 586 YLATQGQPGFQLISKYLKTCKPLTSISDVNYAMKWLRNGFVMLAMMDYPYATNFMGNLPA 765
+ + + L L + D+ + +++R +AM++YPY T+F+ +LPA
Sbjct: 240 LAKSDSGRQYLNVLYKLDPKSKLENKDDIGFLKQYIRESMEAMAMVNYPYPTSFLSSLPA 299
Query: 766 HPVRVACQNIL---ANKDNSIVALREAGAVYYN-TSQTST 873
PV+ AC++ ++ S L + +YYN T ST
Sbjct: 300 WPVKEACKSASQPGKTQEESAEQLYKIVNLYYNYTGDKST 339
>sp|P34528|YM67_CAEEL Putative serine protease K12H4.7 precursor
Length = 510
Score = 105 bits (263), Expect = 1e-22
Identities = 69/193 (35%), Positives = 100/193 (51%), Gaps = 3/193 (1%)
Frame = +1
Query: 4 QILDHFNFLSVQRGYTTKFKQRFLYEDKWYKPGGPLFFYCGNEGSIEGFW-NNTGL-MFE 177
Q LDHF+ SV + F+QR+ + ++WYK GGP F G EG +W + GL +
Sbjct: 65 QTLDHFDS-SVGK----TFQQRYYHNNQWYKAGGPAFLMLGGEGPESSYWVSYPGLEITN 119
Query: 178 LAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKL-KA 354
LA K A V EHR+YG + P + P ++YLS QA+ D I + K +
Sbjct: 120 LAAKQGAWVFDIEHRFYGETHP---TSDMSVPNLKYLSSAQAIEDAAAFIKAMTAKFPQL 176
Query: 355 ANSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFRE 534
AN+K + FGGSY G LAA+ R K+P +V ++ +S P V F ++ EV+
Sbjct: 177 ANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGP---VQAEVDFKEYLEVVQNSITR 233
Query: 535 ENAQCVDIVKDGF 573
+ +C V GF
Sbjct: 234 NSTECAASVTQGF 246
>sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 precursor
Length = 540
Score = 103 bits (257), Expect = 6e-22
Identities = 83/282 (29%), Positives = 129/282 (45%), Gaps = 6/282 (2%)
Frame = +1
Query: 4 QILDHFNFLSVQRGYTTK-FKQRFLYEDKWYKPGGPLFFYCGNEGSIEGFW--NNTGLMF 174
Q LDHF+ Y TK + Q++ Y + + +F G EG G W N
Sbjct: 61 QKLDHFD------PYNTKTWNQKYFYNPVFSRNNSIIFLMIGGEGPENGKWAANPNVQYL 114
Query: 175 ELAPKFNALVVFGEHRYYGVSLPFGVSKSFRQPYIQYLSVEQALADFVYMIPHVQGKLKA 354
+ A +F A V EHR++G S P + ++YL+ +QALAD + I + +
Sbjct: 115 QWAKEFGADVFDLEHRFFGDSWPI---PDMQTSSLRYLTTQQALADLAFFIEFMNQQYGF 171
Query: 355 ANSKVIAFGGSYGGCLAAYIRFKYPNVVLGSLAASAPIGWVSGGDGFHKFFEVITKDFRE 534
N + + FGGSY G LAA+ R KYP + +GS+A+SAP+ F+++ V+ D R
Sbjct: 172 KNPRWVTFGGSYPGSLAAWFRQKYPQLTVGSVASSAPVNLKL---DFYEYAMVVEDDLRI 228
Query: 535 ENAQCVDIVKDGFGQMRYLATQGQPGFQLISKYLKTCKPL---TSISDVNYAMKWLRNGF 705
+ +C KD F QM+ LA + G ++ + P T+ D+N + N +
Sbjct: 229 TDPKCAQATKDAFVQMQKLALTAE-GRNSLNNHFNLQPPFDANTTKLDINNFFGNIFNTY 287
Query: 706 VMLAMMDYPYATNFMGNLPAHPVRVACQNILANKDNSIVALR 831
M Y Y VR C +I+ N + V +R
Sbjct: 288 --QGMTQYTYDGQSNSTHSDKTVRKMC-DIMTNATETDVVMR 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,083,538
Number of Sequences: 369166
Number of extensions: 2358069
Number of successful extensions: 5716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5680
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)