Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J08
(803 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BXK8|CENG2_MOUSE Centaurin-gamma 2 (ARF-GAP with GTP-b... 37 0.048
sp|Q9UPQ3|CENG2_HUMAN Centaurin-gamma 2 (ARF-GAP with GTP-b... 37 0.048
sp|Q96P47|CENG3_HUMAN Centaurin-gamma 3 37 0.082
sp|Q9JHK5|PLEK_MOUSE Pleckstrin 31 3.5
sp|P08567|PLEK_HUMAN Pleckstrin (Platelet p47 protein) 31 3.5
sp|Q99490|CENG1_HUMAN Centaurin-gamma 1 31 4.5
sp|Q6Q308|PLEK_CANFA Pleckstrin 31 4.5
sp|Q51832|RNH2_PORGI Ribonuclease HII (RNase HII) 30 5.9
sp|Q58434|TOP6B_METJA Type II DNA topoisomerase VI subunit ... 30 5.9
>sp|Q8BXK8|CENG2_MOUSE Centaurin-gamma 2 (ARF-GAP with GTP-binding protein-like, ankyrin
repeat and pleckstrin homology domains 1) (AGAP1)
Length = 857
Score = 37.4 bits (85), Expect = 0.048
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGD 138
IK G LLK SG + N +WK YV C N ++ D
Sbjct: 348 IKQGMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHD 386
>sp|Q9UPQ3|CENG2_HUMAN Centaurin-gamma 2 (ARF-GAP with GTP-binding protein-like, ankyrin
repeat and pleckstrin homology domains 1) (AGAP1)
Length = 857
Score = 37.4 bits (85), Expect = 0.048
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGD 138
IK G LLK SG + N +WK YV C N ++ D
Sbjct: 348 IKQGMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHD 386
>sp|Q96P47|CENG3_HUMAN Centaurin-gamma 3
Length = 876
Score = 36.6 bits (83), Expect = 0.082
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGD 138
IK G LLK SG + N +WK YV C N ++ D
Sbjct: 370 IKQGILLKRSGKSLNKEWKKKYVTLCDNGLLTYHPSLHD 408
>sp|Q9JHK5|PLEK_MOUSE Pleckstrin
Length = 350
Score = 31.2 bits (69), Expect = 3.5
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGDSSPKRSIVLK 168
I+ G L+K GS FN+ WK +V ++ +Y+K+ D+SPK I LK
Sbjct: 6 IREGYLVK-KGSVFNT-WKPMWVVLLEDG-IEFYKKKSDNSPKGMIPLK 51
>sp|P08567|PLEK_HUMAN Pleckstrin (Platelet p47 protein)
Length = 350
Score = 31.2 bits (69), Expect = 3.5
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGDSSPKRSIVLK 168
I+ G L+K GS FN+ WK +V ++ +Y+K+ D+SPK I LK
Sbjct: 6 IREGYLVK-KGSVFNT-WKPMWVVLLEDG-IEFYKKKSDNSPKGMIPLK 51
>sp|Q99490|CENG1_HUMAN Centaurin-gamma 1
Length = 836
Score = 30.8 bits (68), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGD 138
IK LLK SG++ N +WK YV N ++ D
Sbjct: 342 IKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSIND 380
>sp|Q6Q308|PLEK_CANFA Pleckstrin
Length = 351
Score = 30.8 bits (68), Expect = 4.5
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 22 IKTGNLLKYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGDSSPKRSIVLK 168
I+ G L+K GS FN+ WK +V ++ +Y+K+ D+SPK I LK
Sbjct: 6 IREGYLVK-RGSVFNT-WKPMWVVLLEDG-IEFYKKKSDNSPKGMIPLK 51
>sp|Q51832|RNH2_PORGI Ribonuclease HII (RNase HII)
Length = 201
Score = 30.4 bits (67), Expect = 5.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 175 SAFLAFGEIIKQLPFKPE---LNANQIDLVIAIPH 270
++FLA I+QLPF+PE ++ N+ D IPH
Sbjct: 87 ASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPH 121
>sp|Q58434|TOP6B_METJA Type II DNA topoisomerase VI subunit B (TopoVI-B)
Length = 660
Score = 30.4 bits (67), Expect = 5.9
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 43 KYSGSAFNSKWKNNYVEFCKNSTFRWYEKQGDSSPKRSIVLKDVSAFLAFGEIIKQLPFK 222
K+ G+ ++K + F + + ++P IVLKD + F ++ +LP K
Sbjct: 168 KWRGTRVEGEFKEVSYNRGEFGPFEYLRRISLATPHAKIVLKDPYGEVVFDRVVNELPKK 227
Query: 223 PE 228
PE
Sbjct: 228 PE 229
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,408,746
Number of Sequences: 369166
Number of extensions: 1222974
Number of successful extensions: 3279
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3268
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)