Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J04
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 399 e-111
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 399 e-111
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 399 e-111
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 397 e-110
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 395 e-109
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 392 e-109
sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein (HSP70) 391 e-108
sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A 389 e-108
sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein 388 e-107
sp|P08106|HSP70_CHICK Heat shock 70 kDa protein (HSP70) 386 e-107
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 399 bits (1024), Expect = e-111
Identities = 212/281 (75%), Positives = 221/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSLYEGIDFYTSITRARFEELNADLFR TL+PVEKALRDAKLDK IH
Sbjct: 273 TLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIH 332
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE ILSGDKSE VQD
Sbjct: 333 DIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMT LIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 452
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK
Sbjct: 453 NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSK 512
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV ++++KNSLESYA+ MKATV
Sbjct: 513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 399 bits (1024), Expect = e-111
Identities = 212/281 (75%), Positives = 221/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSLYEGIDFYTSITRARFEELNADLFR TL+PVEKALRDAKLDK IH
Sbjct: 273 TLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIH 332
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE ILSGDKSE VQD
Sbjct: 333 DIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMT LIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 452
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK
Sbjct: 453 NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSK 512
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV ++++KNSLESYA+ MKATV
Sbjct: 513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 399 bits (1024), Expect = e-111
Identities = 212/281 (75%), Positives = 221/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSLYEGIDFYTSITRARFEELNADLFR TL+PVEKALRDAKLDK IH
Sbjct: 273 TLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIH 332
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE ILSGDKSE VQD
Sbjct: 333 DIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMT LIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 452
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK
Sbjct: 453 NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSK 512
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV ++++KNSLESYA+ MKATV
Sbjct: 513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 397 bits (1020), Expect = e-110
Identities = 211/281 (75%), Positives = 221/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSLYEGIDFYTSITRARFEELNADLFR TL+PVEKALRDAKLDK IH
Sbjct: 273 TLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIH 332
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE ILSGDKSE VQD
Sbjct: 333 DIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMT LIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 452
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK
Sbjct: 453 NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSK 512
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV ++++KNSL+SYA+ MKATV
Sbjct: 513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLKSYAFNMKATV 553
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 395 bits (1014), Expect = e-109
Identities = 209/281 (74%), Positives = 220/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSLYEGIDFYTSITRARFEELNADLFR TL+PVEKALRDAK+DK IH
Sbjct: 273 TLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKMDKAQIH 332
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE ILSGDKSE VQD
Sbjct: 333 DIVLVGGSTRIPKIQKLLQDYFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMT LIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 452
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL GIPPAPRGVPQIEVTFDIDANGI+NVSAV+K TGKENKITITNDKGRLSK
Sbjct: 453 NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKENKITITNDKGRLSK 512
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV +++AKN LESYA+ MK+TV
Sbjct: 513 EDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTV 553
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 392 bits (1008), Expect = e-109
Identities = 206/281 (73%), Positives = 220/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSLYEGIDFYTSITRARFEELNADLFR TL+PVEK+LRDAK+DK +H
Sbjct: 273 TLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKSLRDAKMDKAQVH 332
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE ILSGDKSE VQD
Sbjct: 333 DIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMT LIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 452
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL GIPPAPRGVPQIEVTFDIDANGI+NVSA +K TGKENKITITNDKGRLSK
Sbjct: 453 NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAADKSTGKENKITITNDKGRLSK 512
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV ++++KNSLESYA+ MK+TV
Sbjct: 513 EDIERMVQEAEKYKCEDDVQRDKVSSKNSLESYAFNMKSTV 553
>sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein (HSP70)
Length = 644
Score = 391 bits (1005), Expect = e-108
Identities = 206/281 (73%), Positives = 223/281 (79%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS+QA+IEIDSL+EGIDFYTSITRARFEE+ +DLFR TLEPVEKALRDAK+DK IH
Sbjct: 275 TLSSSSQASIEIDSLFEGIDFYTSITRARFEEMCSDLFRGTLEPVEKALRDAKMDKAQIH 334
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
D+VLVGGSTRIPK+QKLLQD FNG+ELNKSINPDE ILSGDKSE VQD
Sbjct: 335 DVVLVGGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAIQAAILSGDKSENVQDLL 394
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMTALIKRN YSDNQPGV+IQVYEGERAMTKD
Sbjct: 395 LLDVAPLSLGIETAGGVMTALIKRNTTIPSKQTQTFTTYSDNQPGVMIQVYEGERAMTKD 454
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK
Sbjct: 455 NNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSK 514
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
+DIERMV +IAAKNSLESYA+ MK++V
Sbjct: 515 EDIERMVQDADKYKAEDDAQREKIAAKNSLESYAFNMKSSV 555
>sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A
Length = 640
Score = 389 bits (998), Expect = e-108
Identities = 204/281 (72%), Positives = 221/281 (78%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS+QA+IEIDSL+EGIDFYT+ITRARFEEL ADLFRST++PVEK+LRDAK+DK +H
Sbjct: 274 TLSSSSQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPVEKSLRDAKMDKSQVH 333
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPK+QKLL DLF+GKELNKSINPDE ILSGDKSEAVQD
Sbjct: 334 DIVLVGGSTRIPKVQKLLSDLFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDLL 393
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMTALIKRN YSDNQPGVLIQVYEGERAMTKD
Sbjct: 394 LLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGVLIQVYEGERAMTKD 453
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +K TGK+NKITITNDKGRLSK
Sbjct: 454 NNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSK 513
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
DDIERMV RI AKN LESYA+ +K T+
Sbjct: 514 DDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTI 554
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein
Length = 644
Score = 388 bits (996), Expect = e-107
Identities = 204/281 (72%), Positives = 222/281 (79%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS+QA+IEIDSL+EGIDFYT+ITRARFEEL ADLFRST++PVEKALRDAK+DK +H
Sbjct: 272 TLSSSSQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPVEKALRDAKMDKAQVH 331
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
DIVLVGGSTRIPK+QKLL D F+GKELNKSINPDE ILSGDKSEAVQD
Sbjct: 332 DIVLVGGSTRIPKVQKLLSDFFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDLL 391
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMTALIKRN YSDNQPGVLIQVYEGERA+TKD
Sbjct: 392 LLDVAPLSLGIETAGGVMTALIKRNTTIPTKTSETFTTYSDNQPGVLIQVYEGERALTKD 451
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +K TGK+NKITITNDKGRLSK
Sbjct: 452 NNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAQDKSTGKQNKITITNDKGRLSK 511
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
D+IERMV RIAAKN+LESYA+ MK T+
Sbjct: 512 DEIERMVQEAEKYKADDEAQKDRIAAKNALESYAFNMKQTI 552
>sp|P08106|HSP70_CHICK Heat shock 70 kDa protein (HSP70)
Length = 634
Score = 386 bits (992), Expect = e-107
Identities = 207/281 (73%), Positives = 215/281 (76%)
Frame = +2
Query: 2 TLSSSAQANIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALRDAKLDKHTIH 181
TLSSS QA+IEIDSL+EGIDFYTSITRARFEELNADLFR TLEPVEKALRDAKLDK I
Sbjct: 276 TLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQ 335
Query: 182 DIVLVGGSTRIPKIQKLLQDLFNGKELNKSINPDEXXXXXXXXXXXILSGDKSEAVQDXX 361
+IVLVGGSTRIPKIQKLLQD FNGKELNKSINPDE IL GDKSE VQD
Sbjct: 336 EIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILMGDKSENVQDLL 395
Query: 362 XXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKD 541
GIETAGGVMTALIKRN YSDNQ VL+QVYEGERAMTKD
Sbjct: 396 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKD 455
Query: 542 NNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSK 721
NNLLGKF+L GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK
Sbjct: 456 NNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSK 515
Query: 722 DDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATV 844
DDI+RMV R+ AKNSLESY Y MK TV
Sbjct: 516 DDIDRMVQEAEKYKAEDEANRDRVGAKNSLESYTYNMKQTV 556
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,284,146
Number of Sequences: 369166
Number of extensions: 1276223
Number of successful extensions: 4354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3757
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)