Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I22
(716 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38942|CAT2_CLOKL 4-hydroxybutyrate coenzyme A transferase 69 2e-11
sp|P01267|THYG_BOVIN Thyroglobulin precursor 36 0.090
sp|P41412|RES2_SCHPO Cell division cycle related-protein re... 34 0.34
sp|Q9UL15|BAG5_HUMAN BAG-family molecular chaperone regulat... 31 3.8
sp|Q10145|YAS9_SCHPO Hypothetical RNA-binding protein C3H8.... 30 4.9
sp|P54258|ATN1_RAT Atrophin-1 (Dentatorubral-pallidoluysian... 30 8.4
>sp|P38942|CAT2_CLOKL 4-hydroxybutyrate coenzyme A transferase
Length = 429
Score = 68.6 bits (166), Expect = 2e-11
Identities = 39/115 (33%), Positives = 62/115 (53%)
Frame = +1
Query: 262 TKIEDGGHIFLHGGAATPSPLIEHFSKFAKDKGLKNLNVHHIHTEGTFPFHNPEFEGVFR 441
+KIE+ + P L+ K KD + L + H+ G + + FR
Sbjct: 19 SKIENHSRVVFAHAVGEPVDLVNALVK-NKDNYI-GLEIVHMVAMGKGVYTKEGMQRHFR 76
Query: 442 SNSLFTGANCRAAINAGRADYTPIFLSEIPLLFRREIIKLDLALIQVTPPDRHDF 606
N+LF G + R A+N+GRA YTP F E+P LF+ + + +D+ALIQV+ PD++ +
Sbjct: 77 HNALFVGGSTRDAVNSGRAVYTPCFFYEVPSLFKEKRLPVDVALIQVSEPDKYGY 131
>sp|P01267|THYG_BOVIN Thyroglobulin precursor
Length = 2769
Score = 36.2 bits (82), Expect = 0.090
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +1
Query: 100 QMLKKVLSHRLAIYNPYRVLNRSFYEEGLSNEPYHPIPGRFPKWADSPDSLFKNTKIEDG 279
++L K++S+R A +R+ ++ YE G + P R+ + D P S+ + + + G
Sbjct: 801 ELLMKIMSYREAASRNFRLFIQNLYEAG--QQGIFPGLARYSSFQDVPVSVLEGNQTQPG 858
Query: 280 GHIFL 294
G++FL
Sbjct: 859 GNVFL 863
>sp|P41412|RES2_SCHPO Cell division cycle related-protein res2/pct1
Length = 657
Score = 34.3 bits (77), Expect = 0.34
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 172 YEEGLSNEPYHPIPGRFPKWADSPDSLFK-NTKIEDGGHIFLH 297
YEE L + HP GR P + SP F+ N+ I+D GH LH
Sbjct: 211 YEESLLDFFLHPEEGRIPSFLYSPPPDFQVNSVIDDDGHTSLH 253
>sp|Q9UL15|BAG5_HUMAN BAG-family molecular chaperone regulator-5 (BCL2-associated
athanogene 5) (BAG-5)
Length = 447
Score = 30.8 bits (68), Expect = 3.8
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 433 LLRILDYEKEKFLQCVYDEHLNFSILYL*QILKNVRLVATELL 305
LL+ LD E+E +D N SIL + ++LK +R + ELL
Sbjct: 252 LLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELL 294
>sp|Q10145|YAS9_SCHPO Hypothetical RNA-binding protein C3H8.09c in chromosome I
Length = 738
Score = 30.4 bits (67), Expect = 4.9
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Frame = +1
Query: 121 SHRLAIYNPYRVLNRSFYEEGLSNEPYHPIPGRFPKWADSPDSLFKNTKIEDGGHIFLHG 300
+HR +IY+ L + E +E ++P P+ A SP++L N + ++ +L
Sbjct: 266 AHRTSIYSYSANLPNYYNEHNELHEHHNPQTPSSPESAYSPENLQLNHEAQNVE--YLGN 323
Query: 301 GAATPSPLI-----EHFSKFAKDK-------------GLKNLNVHHIHTEG--------T 402
AA S + + F +F KD+ L + H++T+
Sbjct: 324 NAAEKSLQMNLEDEQRFQQFLKDEESIMSNWYPGQFPSASRLFLGHLNTKSLSKRNLWKV 383
Query: 403 FPFHNPEFEGVFRSN----SLFTGANCRAAINAGRADY 504
F + P + V ++N FT +C A+NA + ++
Sbjct: 384 FKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNF 421
>sp|P54258|ATN1_RAT Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)
Length = 1183
Score = 29.6 bits (65), Expect = 8.4
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 133 AIYNPYRVLNRSFYEEGLSN---EPYHPIPGRFPKWADSPDSL 252
+IY+P V N S GLS PYHP P FP PDS+
Sbjct: 133 SIYSPGSVENDSDSSSGLSQGPARPYHP-PPLFPPSPPPPDSI 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,733,481
Number of Sequences: 369166
Number of extensions: 1540674
Number of successful extensions: 3598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3597
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)