Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I20
(861 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P80313|TCPH_MOUSE T-complex protein 1, eta subunit (TCP-... 382 e-106
sp|Q99832|TCPH_HUMAN T-complex protein 1, eta subunit (TCP-... 379 e-105
sp|Q5R5C8|TCPH_PONPY T-complex protein 1, eta subunit (TCP-... 379 e-105
sp|P54409|TCPH_TETPY T-complex protein 1, eta subunit (TCP-... 331 1e-90
sp|P87153|TCPH_SCHPO Probable T-complex protein 1, eta subu... 310 3e-84
sp|P42943|TCPH_YEAST T-complex protein 1, eta subunit (TCP-... 295 8e-80
sp|O77323|TCPH_PLAF7 T-complex protein 1, eta subunit (TCP-... 295 8e-80
sp|P54410|TCPH_TETTH T-complex protein 1, eta subunit (TCP-... 262 8e-70
sp|Q52500|THSB_PYRKO Thermosome beta subunit (Thermosome su... 180 5e-45
sp|O24730|THSB_THEK1 Thermosome beta subunit (Thermosome su... 180 5e-45
>sp|P80313|TCPH_MOUSE T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 544
Score = 382 bits (980), Expect = e-106
Identities = 195/282 (69%), Positives = 231/282 (81%)
Frame = +2
Query: 14 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 193
++LLKEGTD+SQGIPQ++SNI+A Q IAEAVRTTLGPRGMDKLI+D + KATISNDGATI
Sbjct: 6 VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65
Query: 194 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 373
LKLLDVVHP A T+V IA SQD EVGDGTTSV LLA+EFLKQ K ++EEG+HP++I
Sbjct: 66 LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125
Query: 374 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 553
+V ++K + E+R +LEKCA TALSSKL++ K FF+K+VVDAV
Sbjct: 126 RTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMM 185
Query: 554 LDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELE 733
LD LL L MIGIKKV GG+L+ESQL+AGVAFKKTFSYAGFEMQPK YK PKI+LLN+ELE
Sbjct: 186 LDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELE 245
Query: 734 LKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAK 859
LK+EK+NAEIRV +VE+YQ IVDAEW ILYDKLE I++SGAK
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAK 287
>sp|Q99832|TCPH_HUMAN T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef
interacting protein)
Length = 543
Score = 379 bits (973), Expect = e-105
Identities = 194/282 (68%), Positives = 229/282 (81%)
Frame = +2
Query: 14 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 193
++LLKEGTD+SQGIPQ++SNI+A Q IAEAVRTTLGPRGMDKLI+D + KATISNDGATI
Sbjct: 6 VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65
Query: 194 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 373
LKLLDVVHP A T+V IA SQD EVGDGTTSV LLA+EFLKQ K ++EEG+HP++I
Sbjct: 66 LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125
Query: 374 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 553
+V ++K + E+R LLEKCA TALSSKL++ K FF+K+VVDAV
Sbjct: 126 RTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMM 185
Query: 554 LDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELE 733
LD LL L MIGIKKV GG+L++SQL+AGVAFKKTFSYAGFEMQPK Y PKI+LLN+ELE
Sbjct: 186 LDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELE 245
Query: 734 LKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAK 859
LK+EK+NAEIRV +VE+YQ IVDAEW ILYDKLE I+ SGAK
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAK 287
>sp|Q5R5C8|TCPH_PONPY T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 543
Score = 379 bits (972), Expect = e-105
Identities = 193/282 (68%), Positives = 229/282 (81%)
Frame = +2
Query: 14 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 193
++LLKEGTD+SQGIPQ++SNI+A Q IAEAVRTTLGPRGMDKLI+D + KATISNDGATI
Sbjct: 6 VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65
Query: 194 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 373
LKLLDVVHP A T+V IA SQD EVGDGTTSV LLA+EFLKQ K ++EEG+HP++I
Sbjct: 66 LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125
Query: 374 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 553
+V ++K + E+R LLEKCA TALSSKL++ K FF+K+VVDAV
Sbjct: 126 RTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMM 185
Query: 554 LDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELE 733
LD LL L MIGIKKV GG+L++SQL+AGVAFKKTFSYAGFEMQPK Y PK++LLN+ELE
Sbjct: 186 LDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELE 245
Query: 734 LKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAK 859
LK+EK+NAEIRV +VE+YQ IVDAEW ILYDKLE I+ SGAK
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAK 287
>sp|P54409|TCPH_TETPY T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 558
Score = 331 bits (849), Expect = 1e-90
Identities = 172/283 (60%), Positives = 216/283 (76%), Gaps = 1/283 (0%)
Frame = +2
Query: 14 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 193
I+LLK+GTDTSQG QI+SNI A+QSI E V+TTLGPRGMDKLI + ATISNDGATI
Sbjct: 6 ILLLKDGTDTSQGKAQIISNINAVQSIVEIVKTTLGPRGMDKLIEGNRG-ATISNDGATI 64
Query: 194 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 373
L LLD+VHP A T+V IA +QDDEVGDGTTSV LLA E LK++K+FIEEG+HP+++
Sbjct: 65 LNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGY 124
Query: 374 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 553
S + +D E+R +L KCA T+L+SKL+A YKEFFS++VV AV +
Sbjct: 125 KEALKLALTFLQENSYSVADKSDGEKREMLLKCAQTSLNSKLLAHYKEFFSEMVVQAVET 184
Query: 554 LD-HLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIEL 730
LD +LL D+IGIK V GGS+ +S L+ GVAFKKTFSYAGFE QPK + PKI LLNIEL
Sbjct: 185 LDTNLLDKDLIGIKMVTGGSVTDSVLVKGVAFKKTFSYAGFEQQPKKFANPKICLLNIEL 244
Query: 731 ELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAK 859
ELK+EKENAEIR+ + ++Y+ IVDAEW+++Y+KL I +SGA+
Sbjct: 245 ELKAEKENAEIRIDNPDDYKSIVDAEWELIYEKLRKIVESGAQ 287
>sp|P87153|TCPH_SCHPO Probable T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 558
Score = 310 bits (794), Expect = 3e-84
Identities = 155/287 (54%), Positives = 212/287 (73%), Gaps = 1/287 (0%)
Frame = +2
Query: 2 PGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISND 181
P +++LKEGTD SQG Q++SNI A ++ + +RTTLGP G DKL++D++ + ISND
Sbjct: 6 PQIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISND 65
Query: 182 GATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELI 361
GATI+KLLD+VHP A T+V IA +QD EVGDGTTSV++ A E L++A++F+E+GV LI
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 362 QXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVD 541
++ ++ ++ + R LL KCASTA++SKL+ + FF+K+VVD
Sbjct: 126 IRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVD 185
Query: 542 AVSSLDHL-LPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLL 718
AV +LD L +MIGIKKVPGG++++S L+ GVAFKKTFSYAGFE QPK +K PKI L
Sbjct: 186 AVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCL 245
Query: 719 NIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAK 859
++ELELK+EK+NAE+RV V+EYQ IVDAEW+I++ KLEAI +GAK
Sbjct: 246 DVELELKAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAK 292
>sp|P42943|TCPH_YEAST T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 550
Score = 295 bits (756), Expect = 8e-80
Identities = 158/282 (56%), Positives = 199/282 (70%), Gaps = 1/282 (0%)
Frame = +2
Query: 14 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 193
IV+LKEGTD SQG QI+SNI A ++ EA++ TLGP G D LI+ K TISNDGATI
Sbjct: 10 IVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATI 69
Query: 194 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 373
LKLLDVVHP A T+V I+ +QD EVGDGTTSV +LA E +K+AK F+EEG+ LI
Sbjct: 70 LKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGY 129
Query: 374 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 553
+V I + R LLE+CA TA+SSKL+ +FF K+ VDAV S
Sbjct: 130 RKAVSLAVEKINELAVDI-TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLS 188
Query: 554 LD-HLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIEL 730
LD + L +IGIKK+PGG+++ES I GVAFKKTFSYAGFE QPK + PKI LN+EL
Sbjct: 189 LDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVEL 248
Query: 731 ELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGA 856
ELK+EK+NAE+RV VE+YQ IVDAEWQ++++KL + ++GA
Sbjct: 249 ELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGA 290
>sp|O77323|TCPH_PLAF7 T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 539
Score = 295 bits (756), Expect = 8e-80
Identities = 157/281 (55%), Positives = 195/281 (69%)
Frame = +2
Query: 14 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 193
IVLLKEGTDT+QG QI+ NI A Q I + V+TTLGPRGMDKLI E+ TI+NDGAT+
Sbjct: 9 IVLLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDKLIYTERD-VTITNDGATV 67
Query: 194 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 373
+ LL++ HP AS +V IA SQDDEVGDGTTSV+++A E L +AK + +G+ P +I
Sbjct: 68 MNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGF 127
Query: 374 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 553
S+ N+ E+RS+L KCA TAL+SKLV+ +KEFF +LVV+AV
Sbjct: 128 RNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYK 187
Query: 554 LDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELE 733
L L IGIKKV GGS ++QLI GVAFKKTFSYAGFE QPK + PKI LLN+ELE
Sbjct: 188 LGDNLDKSNIGIKKVTGGSCLDTQLIYGVAFKKTFSYAGFEQQPKKFINPKILLLNVELE 247
Query: 734 LKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGA 856
LK+EKENAE+R+ + EY IV AEW I++ KL I GA
Sbjct: 248 LKAEKENAEVRIENPNEYNSIVQAEWDIIFKKLNLIKDCGA 288
>sp|P54410|TCPH_TETTH T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 353
Score = 262 bits (670), Expect = 8e-70
Identities = 134/228 (58%), Positives = 171/228 (75%), Gaps = 1/228 (0%)
Frame = +2
Query: 176 NDGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPE 355
NDGATIL LLD+VHP A T+V IA +QDDEVGDGTTSV LLA E LK++K FIEEG+HP+
Sbjct: 1 NDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKYFIEEGMHPQ 60
Query: 356 LIQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLV 535
+I + + N+ E+R +L KCA T+L+SKL+A YKEFFS+LV
Sbjct: 61 IITKGYKEALKLALQFLHENAHSVADKNETEKREMLIKCAQTSLNSKLLAHYKEFFSELV 120
Query: 536 VDAVSSLD-HLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKIS 712
V AV +L+ +LL D+IGIK V GGS+ +S L++GVAFKKTFSYAGFE QPK + PKI
Sbjct: 121 VQAVETLETNLLDKDLIGIKMVTGGSVTDSFLVSGVAFKKTFSYAGFEQQPKKFNNPKIC 180
Query: 713 LLNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGA 856
LLNIELELK+EKENAEIR+ + ++Y+ IVDAEW+++Y+KL I +SGA
Sbjct: 181 LLNIELELKAEKENAEIRIENPDDYKSIVDAEWELIYEKLRKIVESGA 228
>sp|Q52500|THSB_PYRKO Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 546
Score = 180 bits (456), Expect = 5e-45
Identities = 103/290 (35%), Positives = 167/290 (57%), Gaps = 6/290 (2%)
Frame = +2
Query: 5 GAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDG 184
G +V+L EGT G NI A + IAE VRTTLGP+GMDK+++D I+NDG
Sbjct: 6 GQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDG 65
Query: 185 ATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQ 364
ATIL +D+ HP A +V++A +QD E GDGTT+ +++A E L++A+ +++ +HP +I
Sbjct: 66 ATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIII 125
Query: 365 XXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDA 544
+I K D E R +L+K A T+++ K +E+ +++ V+A
Sbjct: 126 KGYALAAEKAQEILD----EIAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEA 181
Query: 545 VSSL------DHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPK 706
V + + + LD I +K GGS++++QLI GV K + G PK + K
Sbjct: 182 VKQVAEKVGETYKVDLDNIKFEKKEGGSVKDTQLIKGVVIDKEVVHPG---MPKRVEGAK 238
Query: 707 ISLLNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGA 856
I+L+N LE+K + +AEIR++S E+ Q ++ E ++L + ++ I + GA
Sbjct: 239 IALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGA 288
>sp|O24730|THSB_THEK1 Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 546
Score = 180 bits (456), Expect = 5e-45
Identities = 103/290 (35%), Positives = 167/290 (57%), Gaps = 6/290 (2%)
Frame = +2
Query: 5 GAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDG 184
G +V+L EGT G NI A + IAE VRTTLGP+GMDK+++D I+NDG
Sbjct: 6 GQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDG 65
Query: 185 ATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQ 364
ATIL +D+ HP A +V++A +QD E GDGTT+ +++A E L++A+ +++ +HP +I
Sbjct: 66 ATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIII 125
Query: 365 XXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDA 544
+I K D E R +L+K A T+++ K +E+ +++ V+A
Sbjct: 126 KGYALAAEKAQEILD----EIAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEA 181
Query: 545 VSSL------DHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPK 706
V + + + LD I +K GGS++++QLI GV K + G PK + K
Sbjct: 182 VKQVAEKVGETYKVDLDNIKFEKKEGGSVKDTQLIKGVVIDKEVVHPG---MPKRVEGAK 238
Query: 707 ISLLNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGA 856
I+L+N LE+K + +AEIR++S E+ Q ++ E ++L + ++ I + GA
Sbjct: 239 IALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGA 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,878,719
Number of Sequences: 369166
Number of extensions: 1288541
Number of successful extensions: 4690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4221
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)