Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I13
(569 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49096|CYB5_MUSDO Cytochrome b5 (CYTB5) 115 1e-25
sp|P00173|CYB5_RAT Cytochrome b5 114 2e-25
sp|P56395|CYB5_MOUSE Cytochrome b5 114 2e-25
sp|Q9V4N3|CYB5_DROME Cytochrome b5 (CYTB5) 113 3e-25
sp|P00169|CYB5_RABIT Cytochrome b5 112 5e-25
sp|P00167|CYB5_HUMAN Cytochrome b5 112 5e-25
sp|P00172|CYB5_PIG Cytochrome b5 109 5e-24
sp|P00170|CYB5_HORSE Cytochrome b5 108 7e-24
sp|P00168|CYB5_ALOSE Cytochrome b5 107 2e-23
sp|P00174|CYB5_CHICK Cytochrome b5 107 2e-23
>sp|P49096|CYB5_MUSDO Cytochrome b5 (CYTB5)
Length = 134
Score = 115 bits (287), Expect = 1e-25
Identities = 55/103 (53%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
FT AEV ++++ + W +IH+ VYDVT FL EHPGGEEVL+EQ+G ATE FEDVGHSSD
Sbjct: 9 FTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSD 68
Query: 184 ARELMKQYKIGRIANEDKEN---RNRFTSTVTPEDGENSSSSW 303
ARE+MKQYK+G + E++ N ++ T + E+S SW
Sbjct: 69 AREMMKQYKVGELVAEERSNVPEKSEPTWNTEQKTEESSMKSW 111
>sp|P00173|CYB5_RAT Cytochrome b5
Length = 134
Score = 114 bits (284), Expect = 2e-25
Identities = 56/121 (46%), Positives = 79/121 (65%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+++H ++S WV++H +VYD+TKFLEEHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 12 YTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTD 71
Query: 184 ARELMKQYKIGRIANEDKENRNRFTSTVTPEDGENSSSSWSGXXXXXXXXXXXXXXYKLF 363
AREL K Y IG + +D+ + + T+ E++SS W+ Y+L+
Sbjct: 72 ARELSKTYIIGELHPDDRSKIAKPSETLI-TTVESNSSWWTNWVIPAISALVVALMYRLY 130
Query: 364 M 366
M
Sbjct: 131 M 131
>sp|P56395|CYB5_MOUSE Cytochrome b5
Length = 134
Score = 114 bits (284), Expect = 2e-25
Identities = 56/121 (46%), Positives = 79/121 (65%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+++H ++S WV++H +VYD+TKFLEEHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 12 YTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTD 71
Query: 184 ARELMKQYKIGRIANEDKENRNRFTSTVTPEDGENSSSSWSGXXXXXXXXXXXXXXYKLF 363
AREL K Y IG + +D+ + + T+ E++SS W+ Y+L+
Sbjct: 72 ARELSKTYIIGELHPDDRSKIAKPSDTLI-TTVESNSSWWTNWVIPAISALAVALMYRLY 130
Query: 364 M 366
M
Sbjct: 131 M 131
>sp|Q9V4N3|CYB5_DROME Cytochrome b5 (CYTB5)
Length = 134
Score = 113 bits (283), Expect = 3e-25
Identities = 52/103 (50%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
FT AEV +H++N+ W++IH+ +YDVT FL EHPGGEEVL+EQ+G ATE FEDVGHS+D
Sbjct: 9 FTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSND 68
Query: 184 ARELMKQYKIGRIANEDKEN---RNRFTSTVTPEDGENSSSSW 303
AR++MK+YKIG + ++ + ++ T + + E+S SW
Sbjct: 69 ARDMMKKYKIGELVESERTSVAQKSEPTWSTEQQTEESSVKSW 111
>sp|P00169|CYB5_RABIT Cytochrome b5
Length = 134
Score = 112 bits (281), Expect = 5e-25
Identities = 56/122 (45%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+K+H+ ++S W+++H +VYD+TKFLEEHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 12 YTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTD 71
Query: 184 ARELMKQYKIGRIANEDKENRNRFTST-VTPEDGENSSSSWSGXXXXXXXXXXXXXXYKL 360
AREL K + IG + +D+ ++ T +T D ++SS W+ Y+L
Sbjct: 72 ARELSKTFIIGELHPDDRSKLSKPMETLITTVD--SNSSWWTNWVIPAISALIVALMYRL 129
Query: 361 FM 366
+M
Sbjct: 130 YM 131
>sp|P00167|CYB5_HUMAN Cytochrome b5
Length = 134
Score = 112 bits (281), Expect = 5e-25
Identities = 54/121 (44%), Positives = 80/121 (66%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+++H+ ++S W+++H +VYD+TKFLEEHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 12 YTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTD 71
Query: 184 ARELMKQYKIGRIANEDKENRNRFTSTVTPEDGENSSSSWSGXXXXXXXXXXXXXXYKLF 363
ARE+ K + IG + +D+ N+ T+ ++SSS W+ Y+L+
Sbjct: 72 AREMSKTFIIGELHPDDRPKLNKPPETLITTI-DSSSSWWTNWVIPAISAVAVALMYRLY 130
Query: 364 M 366
M
Sbjct: 131 M 131
>sp|P00172|CYB5_PIG Cytochrome b5
Length = 134
Score = 109 bits (272), Expect = 5e-24
Identities = 50/97 (51%), Positives = 72/97 (74%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+++H++++S W+++H +VYD+TKFLEEHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 12 YTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTD 71
Query: 184 ARELMKQYKIGRIANEDKENRNRFTSTVTPEDGENSS 294
AREL K + IG + +D+ + + T+ NSS
Sbjct: 72 ARELSKTFIIGELHPDDRSKIAKPSETLITTVESNSS 108
>sp|P00170|CYB5_HORSE Cytochrome b5
Length = 134
Score = 108 bits (271), Expect = 7e-24
Identities = 52/101 (51%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+K+H+ ++S W+++H +VYD+TKFLE+HPGGEEVL EQ+G ATE FED+GHS+D
Sbjct: 12 YTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTD 71
Query: 184 ARELMKQYKIGRIANEDKENRNRFTST-VTPEDGENSSSSW 303
AREL K + IG + +D+ + T +T D S+SSW
Sbjct: 72 ARELSKTFIIGELHPDDRSKIAKPVETLITTVD---SNSSW 109
>sp|P00168|CYB5_ALOSE Cytochrome b5
Length = 87
Score = 107 bits (268), Expect = 2e-23
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+TL E+++H+ ++S W+++H +VYD+TKFLEEHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 8 YTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTD 67
Query: 184 ARELMKQYKIGRIANEDK 237
AREL K Y IG + +D+
Sbjct: 68 ARELSKTYIIGELHPDDR 85
>sp|P00174|CYB5_CHICK Cytochrome b5
Length = 138
Score = 107 bits (267), Expect = 2e-23
Identities = 50/121 (41%), Positives = 77/121 (63%)
Frame = +1
Query: 4 FTLAEVKEHSSNESCWVVIHDEVYDVTKFLEEHPGGEEVLMEQSGNHATEAFEDVGHSSD 183
+ L EV++H++++S W+++H +YD+TKFL+EHPGGEEVL EQ+G ATE FEDVGHS+D
Sbjct: 17 YRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTD 76
Query: 184 ARELMKQYKIGRIANEDKENRNRFTSTVTPEDGENSSSSWSGXXXXXXXXXXXXXXYKLF 363
AR L + + IG + +D+ + T+ +++SSSWS Y+ +
Sbjct: 77 ARALSETFIIGELHPDDRPKLQKPAETLI-TTVQSNSSSWSNWVIPAIAAIIVALMYRSY 135
Query: 364 M 366
M
Sbjct: 136 M 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,429,437
Number of Sequences: 369166
Number of extensions: 926788
Number of successful extensions: 2613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2581
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)