Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I12
(926 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97821|CATC_MOUSE Dipeptidyl-peptidase I precursor (DPP-... 355 1e-97
sp|P53634|CATC_HUMAN Dipeptidyl-peptidase I precursor (DPP-... 354 2e-97
sp|Q60HG6|CATC_MACFA Dipeptidyl-peptidase I precursor (DPP-... 346 5e-95
sp|P80067|CATC_RAT Dipeptidyl-peptidase I precursor (DPP-I)... 343 5e-94
sp|O97578|CATC_CANFA Dipeptidyl-peptidase I precursor (DPP-... 333 5e-91
sp|Q26563|CATC_SCHMA Cathepsin C precursor 304 2e-82
sp|Q9PYY5|CATV_GVXN Viral cathepsin (V-cath) (Cysteine prot... 142 2e-33
sp|O46427|CATH_PIG Cathepsin H precursor [Contains: Catheps... 142 2e-33
sp|Q80LP4|CATV_NPVAH Viral cathepsin (V-cath) (Cysteine pro... 141 2e-33
sp|P00786|CATH_RAT Cathepsin H precursor (Cathepsin B3) (Ca... 141 3e-33
>sp|P97821|CATC_MOUSE Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 462
Score = 355 bits (910), Expect = 1e-97
Identities = 163/276 (59%), Positives = 211/276 (76%), Gaps = 1/276 (0%)
Frame = +2
Query: 5 EFHNKSLLDIIRMSGGPESKLDRPKSAPLTKAVFDSVKLLPKNFDWRNVNGINYVSPVRS 184
E+ SL D+IR SG + ++ RPK AP+T + + LP+++DWRNV G+NYVSPVR+
Sbjct: 192 EYEKMSLRDLIRRSGHSQ-RIPRPKPAPMTDEIQQQILNLPESWDWRNVQGVNYVSPVRN 250
Query: 185 QNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVECSPYSQGCNGGFPYLIAGKFA 364
Q CGSCYSFAS G+LEAR RI +NN+ P+LSPQ+VV CSPY+QGC+GGFPYLIAGK+A
Sbjct: 251 QESCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYA 310
Query: 365 EDFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVGGFYGATNEPLMRMELVQNGPIA 544
+DFG+ +ESC PY KD C + NC RY++++Y YVGGFYG NE LM++ELV++GP+A
Sbjct: 311 QDFGVVEESCFPYTAKDSPCKpreNCLRYYSSDYYYVGGFYGGCNEALMKLELVKHGPMA 370
Query: 545 VGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFELTNHAVLIVGYG-ETNKGEKYWT 721
V FEV++DF Y+ G+YHH + FNPFELTNHAVL+VGYG + G +YW
Sbjct: 371 VAFEVHDDFLHYHSGIYHHTGLSD-------PFNPFELTNHAVLLVGYGRDPVTGIEYWI 423
Query: 722 VKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
+KNSWG NWGE+GYF+IRRG+DEC IES+AVA+ PI
Sbjct: 424 IKNSWGSNWGESGYFRIRRGTDECAIESIAVAAIPI 459
>sp|P53634|CATC_HUMAN Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 463
Score = 354 bits (909), Expect = 2e-97
Identities = 165/276 (59%), Positives = 205/276 (74%), Gaps = 1/276 (0%)
Frame = +2
Query: 5 EFHNKSLLDIIRMSGGPESKLDRPKSAPLTKAVFDSVKLLPKNFDWRNVNGINYVSPVRS 184
E+ +L D+IR SGG K+ RPK APLT + + LP ++DWRNV+GIN+VSPVR+
Sbjct: 192 EYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRN 251
Query: 185 QNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVECSPYSQGCNGGFPYLIAGKFA 364
Q CGSCYSFAS G+LEAR RI +NN+ P+LSPQ+VV CS Y+QGC GGFPYLIAGK+A
Sbjct: 252 QASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYA 311
Query: 365 EDFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVGGFYGATNEPLMRMELVQNGPIA 544
+DFG+ +E+C PY G D C K +C RY+++ Y YVGGFYG NE LM++ELV +GP+A
Sbjct: 312 QDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMA 371
Query: 545 VGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFELTNHAVLIVGYG-ETNKGEKYWT 721
V FEVY+DF Y G+YHH + FNPFELTNHAVL+VGYG ++ G YW
Sbjct: 372 VAFEVYDDFLHYKKGIYHHT-------GLRDPFNPFELTNHAVLLVGYGTDSASGMDYWI 424
Query: 722 VKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
VKNSWG WGENGYF+IRRG+DEC IES+AVA+ PI
Sbjct: 425 VKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPI 460
>sp|Q60HG6|CATC_MACFA Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 463
Score = 346 bits (888), Expect = 5e-95
Identities = 160/276 (57%), Positives = 203/276 (73%), Gaps = 1/276 (0%)
Frame = +2
Query: 5 EFHNKSLLDIIRMSGGPESKLDRPKSAPLTKAVFDSVKLLPKNFDWRNVNGINYVSPVRS 184
E+ +L D+I+ SGG K+ RPK PLT + + LP ++DWRNV+GIN+VSPVR+
Sbjct: 192 EYETLTLGDMIKRSGGHSRKIPRPKPTPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRN 251
Query: 185 QNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVECSPYSQGCNGGFPYLIAGKFA 364
Q CGSCYSFAS G+LEAR RI +NN+ P+LS Q+VV CS Y+QGC GGFPYL AGK+A
Sbjct: 252 QASCGSCYSFASVGMLEARIRILTNNSQTPILSSQEVVSCSQYAQGCEGGFPYLTAGKYA 311
Query: 365 EDFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVGGFYGATNEPLMRMELVQNGPIA 544
+DFG+ +E+C PY G D C K +C RY+++ Y YVGGFYG NE LM++ELV +GP+A
Sbjct: 312 QDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLA 371
Query: 545 VGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFELTNHAVLIVGYG-ETNKGEKYWT 721
V FEVY+DF Y G+YHH + FNPFELTNHAVL+VGYG ++ G YW
Sbjct: 372 VAFEVYDDFLHYQNGIYHHT-------GLRDPFNPFELTNHAVLLVGYGTDSASGMDYWI 424
Query: 722 VKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
VKNSWG +WGE+GYF+IRRG+DEC IES+AVA+ PI
Sbjct: 425 VKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPI 460
>sp|P80067|CATC_RAT Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 462
Score = 343 bits (879), Expect = 5e-94
Identities = 159/275 (57%), Positives = 205/275 (74%), Gaps = 1/275 (0%)
Frame = +2
Query: 8 FHNKSLLDIIRMSGGPESKLDRPKSAPLTKAVFDSVKLLPKNFDWRNVNGINYVSPVRSQ 187
+ S+ D+IR SG ++ RPK AP+T + + LP+++DWRNV GIN+VSPVR+Q
Sbjct: 193 YEKLSIRDLIRRSGH-SGRILRPKPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQ 251
Query: 188 NQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVECSPYSQGCNGGFPYLIAGKFAE 367
CGSCYSFAS G+LEAR RI +NN+ P+LSPQ+VV CSPY+QGC+GGFPYLIAGK+A+
Sbjct: 252 ESCGSCYSFASIGMLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQ 311
Query: 368 DFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVGGFYGATNEPLMRMELVQNGPIAV 547
DFG+ +E+C PY D C K NC RY+++ Y YVGGFYG NE LM++ELV++GP+AV
Sbjct: 312 DFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAV 371
Query: 548 GFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFELTNHAVLIVGYG-ETNKGEKYWTV 724
FEV++DF Y+ G+YHH + FNPFELTNHAVL+VGYG + G YW V
Sbjct: 372 AFEVHDDFLHYHSGIYHHTGLSD-------PFNPFELTNHAVLLVGYGKDPVTGLDYWIV 424
Query: 725 KNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
KNSWG WGE+GYF+IRRG+DEC IES+A+A+ PI
Sbjct: 425 KNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPI 459
>sp|O97578|CATC_CANFA Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain 1;
Dipeptidyl-peptidase I heavy chain 2;
Dipeptidyl-peptidase I heavy chain 3;
Dipeptidyl-peptidase I heavy chain 4;
Dipeptidyl-peptidase I light chain]
Length = 435
Score = 333 bits (853), Expect = 5e-91
Identities = 156/276 (56%), Positives = 201/276 (72%), Gaps = 1/276 (0%)
Frame = +2
Query: 5 EFHNKSLLDIIRMSGGPESKLDRPKSAPLTKAVFDSVKLLPKNFDWRNVNGINYVSPVRS 184
E+ +L D++ GG K+ RPK PLT + + + LP ++DWRNV G N+VSPVR+
Sbjct: 167 EYETLTLRDMMTRVGG--RKIPRPKPTPLTAEIHEEISRLPTSWDWRNVRGTNFVSPVRN 224
Query: 185 QNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVECSPYSQGCNGGFPYLIAGKFA 364
Q CGSCY+FAS +LEAR RI +NNT P+LSPQ++V CS Y+QGC GGFPYLIAGK+A
Sbjct: 225 QASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSCSQYAQGCEGGFPYLIAGKYA 284
Query: 365 EDFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVGGFYGATNEPLMRMELVQNGPIA 544
+DFG+ +E+C PY G D C +C RY+++ Y YVGGFYGA NE LM++ELV++GP+A
Sbjct: 285 QDFGLVEEACFPYAGSDSPCK-PNDCFRYYSSEYYYVGGFYGACNEALMKLELVRHGPMA 343
Query: 545 VGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFELTNHAVLIVGYG-ETNKGEKYWT 721
V FEVY+DF Y G+Y+H + FNPFELTNHAVL+VGYG ++ G YW
Sbjct: 344 VAFEVYDDFFHYQKGIYYHT-------GLRDPFNPFELTNHAVLLVGYGTDSASGMDYWI 396
Query: 722 VKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
VKNSWG WGE+GYF+IRRG+DEC IES+AVA+ PI
Sbjct: 397 VKNSWGSRWGEDGYFRIRRGTDECAIESIAVAATPI 432
>sp|Q26563|CATC_SCHMA Cathepsin C precursor
Length = 454
Score = 304 bits (779), Expect = 2e-82
Identities = 147/285 (51%), Positives = 193/285 (67%), Gaps = 8/285 (2%)
Frame = +2
Query: 2 PEFHNKSLLDIIRMSGGPESKLDRP----KSAPLTKAVFDSVKLLPKNFDWRNV--NGIN 163
PE ++ ++ +GG +S + RP + P +K + LP FDW + +
Sbjct: 175 PELSKYTIDELRNRAGGVKSMVTRPSVLNRKTP-SKELISLTGNLPLEFDWTSPPDGSRS 233
Query: 164 YVSPVRSQNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVECSPYSQGCNGGFPY 343
V+P+R+Q CGSCY+ SA LEAR R+ SN + +P+LSPQ VV+CSPYS+GCNGGFP+
Sbjct: 234 PVTPIRNQGICGSCYASPSAAALEARIRLVSNFSEQPILSPQTVVDCSPYSEGCNGGFPF 293
Query: 344 LIAGKFAEDFGMADESCNPYKGKD-GKCSTKRNCKRYFATNYKYVGGFYGATNEPLMRME 520
LIAGK+ EDFG+ + PY G+D GKC+ +NC RY+ T+Y Y+GG+YGATNE LM++E
Sbjct: 294 LIAGKYGEDFGLPQKIVIPYTGEDTGKCTVSKNCTRYYTTDYSYIGGYYGATNEKLMQLE 353
Query: 521 LVQNGPIAVGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFELTNHAVLIVGYG-ET 697
L+ NGP VGFEVY DF+ Y G+YHH + FNPFELTNHAVL+VGYG +
Sbjct: 354 LISNGPFPVGFEVYEDFQFYKEGIYHH----TTVQTDHYNFNPFELTNHAVLLVGYGVDK 409
Query: 698 NKGEKYWTVKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPIL 832
GE YW VKNSWG WGE GYF+I RG+DECG+ESL V +P+L
Sbjct: 410 LSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGVESLGVRFDPVL 454
>sp|Q9PYY5|CATV_GVXN Viral cathepsin (V-cath) (Cysteine proteinase) (CP)
Length = 346
Score = 142 bits (357), Expect = 2e-33
Identities = 87/240 (36%), Positives = 126/240 (52%), Gaps = 2/240 (0%)
Frame = +2
Query: 107 DSVKLLPKNFDWRNVNGINYVSPVRSQNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSP 286
DS +P +FDWR+ N V+ V+ Q +CGSC++F++ +E+ Y I+ N ++ LS
Sbjct: 128 DSSGKVPDSFDWRDRNS---VTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLD--LSE 182
Query: 287 QDVVECSPYSQGCNGGFPYLIAGKFAEDFGMADESCNPYKGKDGKCSTKRNCKRYFATNY 466
Q +V+C + GCNGG G++ E+ PY G DG C +N RY +
Sbjct: 183 QQLVDCDKVNNGCNGGLMSWAFEGIIRAGGISYEAPYPYTGVDGVC---KNTTRYVQLSG 239
Query: 467 KYVGGFYGATNEPLMRMELVQNGPIAVGFEVYNDFRQYNGGVYHH--VFNGNIFMVSKFG 640
Y Y +E +R L + GP++V +V D Y GV H V +G
Sbjct: 240 CYA---YDLRSEKKLRQVLHEKGPVSVAIDVV-DLTNYKSGVAKHCSVDHG--------- 286
Query: 641 FNPFELTNHAVLIVGYGETNKGEKYWTVKNSWGPNWGENGYFKIRRGSDECGIESLAVAS 820
NH VL+VGYG+ N KYWT+KNSWG +WGE G+F+I+R + CGI + AS
Sbjct: 287 ------LNHGVLLVGYGQEND-VKYWTLKNSWGSDWGEQGFFRIKRDVNSCGILNQFAAS 339
>sp|O46427|CATH_PIG Cathepsin H precursor [Contains: Cathepsin H mini chain; Cathepsin
H heavy chain; Cathepsin H light chain]
Length = 335
Score = 142 bits (357), Expect = 2e-33
Identities = 87/237 (36%), Positives = 118/237 (49%), Gaps = 2/237 (0%)
Frame = +2
Query: 125 PKNFDWRNVNGINYVSPVRSQNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVEC 304
P + DWR N+VSPV++Q CGSC++F++ G LE+ I + + L+ Q +V+C
Sbjct: 117 PPSMDWRKKG--NFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLS--LAEQQLVDC 172
Query: 305 SPY--SQGCNGGFPYLIAGKFAEDFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVG 478
+ + GC GG P + G+ E PYKG+D C + + F + +
Sbjct: 173 AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANIT 232
Query: 479 GFYGATNEPLMRMELVQNGPIAVGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFEL 658
+E M + P++ FEV NDF Y G+Y S +
Sbjct: 233 ----MNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYS----------STSCHKTPDK 278
Query: 659 TNHAVLIVGYGETNKGEKYWTVKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
NHAVL VGYGE N G YW VKNSWGP WG NGYF I RG + CG+ A AS PI
Sbjct: 279 VNHAVLAVGYGEEN-GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL--AACASYPI 332
>sp|Q80LP4|CATV_NPVAH Viral cathepsin (V-cath) (Cysteine proteinase) (CP)
Length = 337
Score = 141 bits (356), Expect = 2e-33
Identities = 85/244 (34%), Positives = 123/244 (50%), Gaps = 8/244 (3%)
Frame = +2
Query: 122 LPKNFDWRNVNGINYVSPVRSQNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVE 301
LP+NFDWR VN N ++ V+ Q CGSC++ A+ G LE Y I+ N I LS Q +++
Sbjct: 126 LPQNFDWR-VN--NKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLIN--LSEQQLID 180
Query: 302 CSPYSQGCNGGFPYLIAGKFAEDFGMADESCNPYKGKDGKCSTKR--------NCKRYFA 457
C + C+GG + + G+ +E PY+G G C +CKRY
Sbjct: 181 CDSANMACDGGLMHTAFEQLMNAGGLMEEIDYPYQGTKGVCKIDNKKFALSVSSCKRYIF 240
Query: 458 TNYKYVGGFYGATNEPLMRMELVQNGPIAVGFEVYNDFRQYNGGVYHHVFNGNIFMVSKF 637
N E ++ EL+ GPIA+ + + Y+ G+ H N +
Sbjct: 241 QN------------EENLKKELITMGPIAMAIDAAS-ISTYSKGIIHFCENLGL------ 281
Query: 638 GFNPFELTNHAVLIVGYGETNKGEKYWTVKNSWGPNWGENGYFKIRRGSDECGIESLAVA 817
NHAVL+VGYG T G YWT+KNSWG +WGE+GYF+++R + CG+ + A
Sbjct: 282 --------NHAVLLVGYG-TEGGVSYWTLKNSWGSDWGEDGYFRVKRNINACGLNNQLAA 332
Query: 818 SEPI 829
S I
Sbjct: 333 SATI 336
>sp|P00786|CATH_RAT Cathepsin H precursor (Cathepsin B3) (Cathepsin BA) [Contains:
Cathepsin H mini chain; Cathepsin H heavy chain;
Cathepsin H light chain]
Length = 333
Score = 141 bits (355), Expect = 3e-33
Identities = 89/237 (37%), Positives = 115/237 (48%), Gaps = 2/237 (0%)
Frame = +2
Query: 125 PKNFDWRNVNGINYVSPVRSQNQCGSCYSFASAGLLEARYRIRSNNTIKPVLSPQDVVEC 304
P + DWR N VSPV++Q CGSC++F++ G LE+ I S + L+ Q +V+C
Sbjct: 115 PSSMDWRKKG--NVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMM--TLAEQQLVDC 170
Query: 305 SPY--SQGCNGGFPYLIAGKFAEDFGMADESCNPYKGKDGKCSTKRNCKRYFATNYKYVG 478
+ + GC GG P + G+ E PY GK+G+C F N +
Sbjct: 171 AQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNGQCKFNPEKAVAFVKNVVNIT 230
Query: 479 GFYGATNEPLMRMELVQNGPIAVGFEVYNDFRQYNGGVYHHVFNGNIFMVSKFGFNPFEL 658
+E M + P++ FEV DF Y GVY S +
Sbjct: 231 ----LNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYS----------SNSCHKTPDK 276
Query: 659 TNHAVLIVGYGETNKGEKYWTVKNSWGPNWGENGYFKIRRGSDECGIESLAVASEPI 829
NHAVL VGYGE N G YW VKNSWG NWG NGYF I RG + CG+ A AS PI
Sbjct: 277 VNHAVLAVGYGEQN-GLLYWIVKNSWGSNWGNNGYFLIERGKNMCGL--AACASYPI 330
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,553,087
Number of Sequences: 369166
Number of extensions: 2310852
Number of successful extensions: 6115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5615
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)