Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_I08
(504 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytoch... 239 2e-63
sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytoch... 238 5e-63
sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytoch... 229 2e-60
sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytoch... 229 3e-60
sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytoch... 209 2e-54
sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytoch... 209 3e-54
sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytoch... 209 3e-54
sp|P48170|COX1_ONCMY Cytochrome c oxidase subunit 1 (Cytoch... 206 3e-53
sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytoch... 206 3e-53
sp|Q9ZZM6|COX1_SALSA Cytochrome c oxidase subunit 1 (Cytoch... 205 4e-53
>sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 515
Score = 239 bits (611), Expect = 2e-63
Identities = 119/144 (82%), Positives = 123/144 (85%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAILAGFTH FPLFTGFTLHPS TKAHFGV+FTGVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAILAGFTHWFPLFTGFTLHPSWTKAHFGVMFTGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+L+FIV EA SAKRKVLQPELTATN
Sbjct: 432 GLAGMPRRYSDYPDAYTLWNTLSSIGSLISMTAVIMLMFIVWEAFSAKRKVLQPELTATN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQE 433
IE IHGCPPPYHTFEEPAFVQVQE
Sbjct: 492 IEWIHGCPPPYHTFEEPAFVQVQE 515
>sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 238 bits (608), Expect = 5e-63
Identities = 118/144 (81%), Positives = 123/144 (85%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAILAGFTH FPLFTGFTLHP+ TKAHFGV+FTGVNLTFFPQHFL
Sbjct: 373 YVVAHFHYVLSMGAVFAILAGFTHWFPLFTGFTLHPTWTKAHFGVMFTGVNLTFFPQHFL 432
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+L+FIV EA SAKRKVLQPELTATN
Sbjct: 433 GLAGMPRRYSDYPDAYTLWNTLSSIGSLISMTAVIMLMFIVWEAFSAKRKVLQPELTATN 492
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQE 433
IE IHGCPPPYHTFEEPAFVQVQE
Sbjct: 493 IEWIHGCPPPYHTFEEPAFVQVQE 516
>sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 229 bits (585), Expect = 2e-60
Identities = 112/144 (77%), Positives = 121/144 (84%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAILAGFTH FPLFTG+TLHP+ KAHFGV+FTGVNLTFFPQHFL
Sbjct: 373 YVVAHFHYVLSMGAVFAILAGFTHWFPLFTGYTLHPTWAKAHFGVMFTGVNLTFFPQHFL 432
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+L+FI+ EA S+KRKVLQPEL ATN
Sbjct: 433 GLAGMPRRYSDYPDAYTLWNTMSSIGSLISMTAVIMLMFIIWEAFSSKRKVLQPELIATN 492
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQE 433
IE IHGCPPP+HTFEEPAFVQVQE
Sbjct: 493 IEWIHGCPPPHHTFEEPAFVQVQE 516
>sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 229 bits (584), Expect = 3e-60
Identities = 110/144 (76%), Positives = 120/144 (83%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAILAGFTH FPL TGFTLHP+ KAHFGV+FTGVNLTFFPQHFL
Sbjct: 373 YVVAHFHYVLSMGAVFAILAGFTHWFPLLTGFTLHPTWAKAHFGVMFTGVNLTFFPQHFL 432
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+L+FI+ EA ++KRK+LQPELT TN
Sbjct: 433 GLAGMPRRYSDYPDAYTLWNTLSSIGSLISMTAVIMLMFIIWEAFASKRKILQPELTTTN 492
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQE 433
+E IHGCPPPYHTFEEPAFVQVQE
Sbjct: 493 VEWIHGCPPPYHTFEEPAFVQVQE 516
>sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 209 bits (533), Expect = 2e-54
Identities = 101/143 (70%), Positives = 114/143 (79%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAI+AGF H FPLFTG+TL+ TK HFGV+F GVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAIMAGFVHWFPLFTGYTLNSVWTKIHFGVMFIGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+ +FI+ EA +AKR+VL ELTATN
Sbjct: 432 GLAGMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFTAKREVLSVELTATN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQ 430
+E +HGCPPPYHTFEEPAFVQ+Q
Sbjct: 492 VEWLHGCPPPYHTFEEPAFVQIQ 514
>sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 209 bits (532), Expect = 3e-54
Identities = 100/143 (69%), Positives = 114/143 (79%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAI+AGF H FPLFTGF+LH + TK HFGV+F GVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAIMAGFVHWFPLFTGFSLHDTWTKIHFGVMFIGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVII +FI+ EA ++KR+V+ ELT TN
Sbjct: 432 GLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIIFLFILWEAFASKRQVMSVELTMTN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQ 430
+E +HGCPPPYHTFEEPAFVQV+
Sbjct: 492 VEWLHGCPPPYHTFEEPAFVQVR 514
>sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 209 bits (532), Expect = 3e-54
Identities = 99/145 (68%), Positives = 114/145 (78%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAI+A F H FPLFTG+TLH + TK HFGV+F GVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAIMAAFVHWFPLFTGYTLHDTWTKIHFGVMFVGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+ +FI+ EA +AKR+V+ E+T TN
Sbjct: 432 GLAGMPRRYSDYPDAYTLWNTVSSIGSLISLMAVIMFLFILWEAFAAKREVMAVEMTMTN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQER 436
+E +HGCPPPYHTFEEPAFVQ+Q R
Sbjct: 492 VEWLHGCPPPYHTFEEPAFVQIQTR 516
>sp|P48170|COX1_ONCMY Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 206 bits (524), Expect = 3e-53
Identities = 98/143 (68%), Positives = 112/143 (78%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAI+ F H FPLFTG+TLH + TK HFG++F GVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+ +FI+ EA +AKR+V ELT+TN
Sbjct: 432 GLAGMPRRYSDYPDAYTLWNTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIELTSTN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQ 430
+E +HGCPPPYHTFEEPAFVQVQ
Sbjct: 492 VEWLHGCPPPYHTFEEPAFVQVQ 514
>sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 206 bits (523), Expect = 3e-53
Identities = 98/143 (68%), Positives = 112/143 (78%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAI+A F H FPL TG+TLH + TK HFGV+F GVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAIMAAFVHWFPLLTGYTLHSAWTKIHFGVMFIGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+ +FI+ EA +AKR+VL ELT TN
Sbjct: 432 GLAGMPRRYSDYPDAYALWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVLSVELTMTN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQ 430
+E +HGCPPPYHT+EEPAFVQ+Q
Sbjct: 492 VEWLHGCPPPYHTYEEPAFVQIQ 514
>sp|Q9ZZM6|COX1_SALSA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 205 bits (522), Expect = 4e-53
Identities = 97/143 (67%), Positives = 112/143 (78%)
Frame = +2
Query: 2 YVVAHFHYVLSMGAVFAILAGFTH*FPLFTGFTLHPS*TKAHFGVIFTGVNLTFFPQHFL 181
YVVAHFHYVLSMGAVFAI+ F H FPLFTG+TLH + TK HFG++F GVNLTFFPQHFL
Sbjct: 372 YVVAHFHYVLSMGAVFAIMGAFVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFL 431
Query: 182 GLAGIPRRYSDYPDAYXXXXXXXXXXXXXXXXAVIILIFIV*EALSAKRKVLQPELTATN 361
GLAG+PRRYSDYPDAY AVI+ +FI+ EA +AKR+V E+T+TN
Sbjct: 432 GLAGMPRRYSDYPDAYTLWNTISSIGSLISLVAVIMFLFILWEAFAAKREVASIEMTSTN 491
Query: 362 IE*IHGCPPPYHTFEEPAFVQVQ 430
+E +HGCPPPYHTFEEPAFVQVQ
Sbjct: 492 VEWLHGCPPPYHTFEEPAFVQVQ 514
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,808,527
Number of Sequences: 369166
Number of extensions: 1303966
Number of successful extensions: 3697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3568
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)