Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H19
(490 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZ06|TOLIP_MOUSE Toll-interacting protein 75 8e-14
sp|Q9H0E2|TOLIP_HUMAN Toll-interacting protein 68 1e-11
sp|P36075|CUE2_YEAST Protein CUE2 33 0.36
sp|Q01981|CREA_EMENI DNA-binding protein creA (Carbon catab... 32 1.0
sp|P25185|BRAZ_PSEAE Branched chain amino acid transport sy... 30 3.9
sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing... 30 3.9
sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated pr... 30 3.9
sp|Q9FJ62|GLQ1_ARATH Probable glycerophosphoryl diester pho... 29 5.1
sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 (F-box an... 29 6.7
sp|Q9Z9X0|GATB_BACHD Aspartyl/glutamyl-tRNA(Asn/Gln) amidot... 29 6.7
>sp|Q9QZ06|TOLIP_MOUSE Toll-interacting protein
Length = 274
Score = 75.1 bits (183), Expect = 8e-14
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 21/136 (15%)
Frame = +2
Query: 2 LPE-IFQGNVIDNWYRLTGKQGENQEGQINVVLS---IKEVQMMQP-PTFPMPVRQMVTP 166
+PE + QG V D WY L+G+QG+++EG IN+V+S + MM P P MP
Sbjct: 138 IPESLKQGQVEDEWYSLSGRQGDDKEGMINLVMSYTSLPAAMMMPPQPVVLMPTVYQQGV 197
Query: 167 GYV----MPT------------QPHVRPAPVITDADVDQIHEMFPTIEKKVIKDMLVENG 298
GYV MP P V P P + D+ I +MFP ++++VI+ +L
Sbjct: 198 GYVPIAGMPAVCSPGMVPMAMPPPAVAPQPRCNEEDLKAIQDMFPNMDREVIRSVLEAQR 257
Query: 299 GNKELAISGLLAISDD 346
GNK+ AI+ LL + ++
Sbjct: 258 GNKDAAINSLLQMGEE 273
>sp|Q9H0E2|TOLIP_HUMAN Toll-interacting protein
Length = 274
Score = 68.2 bits (165), Expect = 1e-11
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 21/136 (15%)
Frame = +2
Query: 2 LPE-IFQGNVIDNWYRLTGKQGENQEGQINVVLS--IKEVQMMQPP----TFPMPVRQMV 160
+PE + QG V D WY L+G+QG+++EG IN+V+S + M+ PP P +Q V
Sbjct: 138 IPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGV 197
Query: 161 ------------TPGYVMPTQP--HVRPAPVITDADVDQIHEMFPTIEKKVIKDMLVENG 298
+PG V P V P ++ D+ I +MFP ++++VI+ +L
Sbjct: 198 GYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQR 257
Query: 299 GNKELAISGLLAISDD 346
GNK+ AI+ LL + ++
Sbjct: 258 GNKDAAINSLLQMGEE 273
>sp|P36075|CUE2_YEAST Protein CUE2
Length = 443
Score = 33.1 bits (74), Expect = 0.36
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 218 DADVDQIHEMFPTIEKKVIKDMLVENGGNKELAISGLL 331
D ++ Q+++MFP ++ VIKD V N + E IS LL
Sbjct: 57 DNELHQLYDMFPQLDCSVIKDQFVINEKSVESTISDLL 94
Score = 28.9 bits (63), Expect = 6.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 242 EMFPTIEKKVIKDMLVENGGNKELAISGLLAISDD 346
+MFP I K ++ L+EN + +L I LL +DD
Sbjct: 18 DMFPAISKSKLQVHLLENNNDLDLTIGLLLKENDD 52
>sp|Q01981|CREA_EMENI DNA-binding protein creA (Carbon catabolite repressor)
Length = 416
Score = 31.6 bits (70), Expect = 1.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 98 SIKEVQMMQPPTFPMPVRQMVTPGYVMPTQPHVRP--APVITDADVDQIHEMFPTIEKKV 271
SI+ + + P Q P Y P QPHV P + +++ + Q P + K
Sbjct: 327 SIRHLSLHHTPALAPMEPQAEGPNYYNPNQPHVGPSISDIMSRPEGAQRKLPIPQVPKVA 386
Query: 272 IKDMLVENG 298
++DML +G
Sbjct: 387 VQDMLNPSG 395
>sp|P25185|BRAZ_PSEAE Branched chain amino acid transport system III carrier protein
(LIV-III)
Length = 437
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = -2
Query: 222 ASVITGAGLTCGC-------VGITYPGVTICLTGIGKVGGCIICTSLIDKTTLICPS*FS 64
A ++T GLTC C + ++Y + I L G + + T LI + + + +
Sbjct: 289 ACLVTAVGLTCACAEYFCQRLPLSYRSLVIILAGFSFIVSNLGLTKLIQVSIPVLTAIYP 348
Query: 63 PCL 55
PC+
Sbjct: 349 PCI 351
>sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B (ARID
domain-containing protein 1B) (Osa homolog 2) (hOsa2)
(p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated
factor 250b) (BAF250B)
Length = 2236
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 VVLSIKEVQMMQPPTFPMPVRQMVT--PGYVMPTQPHVRPAPVITDADV 229
V+ ++ Q+ PP P P+R+ +T PG V +QP ++ IT D+
Sbjct: 1570 VMPTVPTSQVTGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSKDI 1618
>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein VPS9
Length = 451
Score = 29.6 bits (65), Expect = 3.9
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 149 RQMVTPGYVMPTQPHVRPAPVITDADVDQIHEMFPTIEKKVIKDMLVENGGNKELAISGL 328
+Q+ P + P ++P +T+ + + +E+F I + ++ L NKE +S L
Sbjct: 341 KQLEVPDELQPNGTLLKPLDEVTNIVISKFNELFSPIGEPTQEEALKSEQSNKEEDVSSL 400
Query: 329 L 331
+
Sbjct: 401 I 401
>sp|Q9FJ62|GLQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 precursor
Length = 766
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 86 NVVLSIKEVQMMQPPTFPMPVRQMVTPGYVMPTQPHVRPAPVITDADVDQ 235
N L+ K+V P P + +V+P + P + P+PV TDADV +
Sbjct: 670 NSCLTRKDVPPYMIPVQPAGLLTIVSPASLPPAEA---PSPVFTDADVTE 716
>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat protein
13)
Length = 735
Score = 28.9 bits (63), Expect = 6.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 305 KELAISGLLAISDDGTQQ*C*NSIATD----QYCDEIINQII 418
KEL++S I+DDG Q C +S+ + YC ++ + II
Sbjct: 557 KELSVSECYRITDDGIQAFCKSSLILEHLDVSYCSQLSDMII 598
>sp|Q9Z9X0|GATB_BACHD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(Asp/Glu-ADT subunit B)
Length = 476
Score = 28.9 bits (63), Expect = 6.7
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 257 IEKKVIKDMLVENGGNKE--LAISGLLAISDDG 349
I KKV KD L+E GG+ E + GL+ ISD+G
Sbjct: 386 IAKKVFKD-LIEKGGDPEEIVKAKGLVQISDEG 417
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,535,572
Number of Sequences: 369166
Number of extensions: 1174902
Number of successful extensions: 3383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3377
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)