Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H18
(538 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54611|VATE_DROME Vacuolar ATP synthase subunit E (V-ATP... 181 1e-45
sp|P36543|VATE_HUMAN Vacuolar ATP synthase subunit E (V-ATP... 179 4e-45
sp|P11019|VATE_BOVIN Vacuolar ATP synthase subunit E (V-ATP... 177 1e-44
sp|P31402|VATE_MANSE Vacuolar ATP synthase subunit E (V-ATP... 176 3e-44
sp|Q9U1G5|VATE_HETSC Vacuolar ATP synthase subunit E (V-ATP... 167 1e-41
sp|P50518|VATE_MOUSE Vacuolar ATP synthase subunit E (V-ATP... 155 5e-38
sp|O23948|VATE_GOSHI Vacuolar ATP synthase subunit E (V-ATP... 130 3e-30
sp|Q9SWE7|VATE_CITLI Vacuolar ATP synthase subunit E (V-ATP... 129 6e-30
sp|Q9MB46|VATE_CITUN Vacuolar ATP synthase subunit E (V-ATP... 129 6e-30
sp|Q39258|VATE_ARATH Vacuolar ATP synthase subunit E (V-ATP... 128 8e-30
>sp|P54611|VATE_DROME Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit) (V-ATPase 28 kDa subunit)
Length = 226
Score = 181 bits (458), Expect = 1e-45
Identities = 91/178 (51%), Positives = 129/178 (72%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
L++ DVQKQIK+M++FIEQEA EK +EI++KA+EEF IEK RLVQ QR K+ E++ K+EK
Sbjct: 3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++E +KKIQ SNM+NQARLK+L +++HV VL +A+KRL +T + +Y+ L +LI Q
Sbjct: 63 QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLPDDLAGG 536
GLFQ++E KVI+RC D+ LV +L Y+A+ VEL I++ + L D GG
Sbjct: 123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQINQNVELFIDEKDFLSADTCGG 180
>sp|P36543|VATE_HUMAN Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit) (V-ATPase 31 kDa subunit) (P31)
Length = 226
Score = 179 bits (454), Expect = 4e-45
Identities = 87/178 (48%), Positives = 133/178 (74%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
L++ DVQKQIK+M++FIEQEA EK +EI++KA+EEF IEK RLVQ QR K+ E++ K+EK
Sbjct: 3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++EQ+KKIQ SN+MNQARLK+L + + + D+L EA++RL + D +Y+ L L+ Q
Sbjct: 63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLPDDLAGG 536
GL+QLLE ++I+RC + D LV+ + + Y+ T+ V++ I++++ LP+D+AGG
Sbjct: 123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 180
>sp|P11019|VATE_BOVIN Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit) (V-ATPase 31 kDa subunit) (P31)
Length = 226
Score = 177 bits (450), Expect = 1e-44
Identities = 86/178 (48%), Positives = 132/178 (74%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
L++ DVQKQIK+M++FIEQEA EK +EI++KA+EEF IEK RLVQ QR K+ E++ K+EK
Sbjct: 3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++EQ+KKIQ SN+MNQARLK+L + + + D+L EA++RL + D +Y+ L L+ Q
Sbjct: 63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLPDDLAGG 536
GL+QLLE ++I+RC + D LV+ + + Y+ T+ V++ I+++ LP+++AGG
Sbjct: 123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDVDVQIDQEAYLPEEIAGG 180
>sp|P31402|VATE_MANSE Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit) (V-ATPase 28 kDa subunit)
Length = 226
Score = 176 bits (446), Expect = 3e-44
Identities = 92/178 (51%), Positives = 127/178 (71%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
L++ DVQKQIK+M++FIEQEA EK +EI++KA+EEF IEK RLVQ QR K+ E++ K+EK
Sbjct: 3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++E +KKIQ SNM+NQARLK+L +++HV++VL EA+KRL + D + Y + L LI Q
Sbjct: 63 QVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQ 122
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLPDDLAGG 536
LFQL+E V +R + D LVE +L Y+AK + V L I+ +N LP D GG
Sbjct: 123 ALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIKKDVVLKIDNENFLPPDTCGG 180
>sp|Q9U1G5|VATE_HETSC Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit)
Length = 226
Score = 167 bits (424), Expect = 1e-41
Identities = 83/178 (46%), Positives = 128/178 (71%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
++++DVQKQ+++M++FIEQEA EK +EI++KA+EEF IEK +LVQ QR K+ E++ K+EK
Sbjct: 3 ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGKLVQLQRQKIMEYYEKKEK 62
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++E ++KIQ SNM NQ+RLK L + +H+K+VL EA+ L ++ D ++Y LK L+ Q
Sbjct: 63 QVELQRKIQRSNMQNQSRLKCLKARDDHLKNVLEEARANLSKISADRERYPAILKGLLLQ 122
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLPDDLAGG 536
GLFQLLE+KV++RC + D +V IL EC + + E+ I+ ++ L + AGG
Sbjct: 123 GLFQLLESKVVLRCRKKDEEMVARILPECLEEVQRTWGNRSEVKIDNEHFLSPESAGG 180
>sp|P50518|VATE_MOUSE Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit) (V-ATPase 31 kDa subunit) (P31)
Length = 228
Score = 155 bits (393), Expect = 5e-38
Identities = 81/180 (45%), Positives = 128/180 (71%), Gaps = 2/180 (1%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDE-INSKADEEFEIEKSRLVQDQRSKMNEFFSKEE 179
L + DVQKQIK+M++FIEQEA EK +E I++KA+EEF IEK RL++ QR K+ E++ K+E
Sbjct: 3 LRHADVQKQIKHMMAFIEQEANEKAEEEIDAKAEEEFNIEKGRLLETQRLKIMEYYEKKE 62
Query: 180 KKL-EQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLI 356
K++ +Q+KKIQ SN+MNQARLK+L + + + D+L EA++RL + D +Y+ L L+
Sbjct: 63 KQIRQQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLMKVVKDTTRYQVLLDGLV 122
Query: 357 TQGLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLPDDLAGG 536
QGL+QLLE ++I+RC + D LV+ + + Y+ T+ V++ I+++ ++AGG
Sbjct: 123 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKRDVDVQIDQEPTCLRNIAGG 182
>sp|O23948|VATE_GOSHI Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit)
Length = 237
Score = 130 bits (326), Expect = 3e-30
Identities = 69/172 (40%), Positives = 107/172 (62%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
+++ DV KQI+ M+ FI QEA+EK +EI+ A+EEF IEK +LV+ ++ K+ + + K+EK
Sbjct: 1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++E RKKI++S +N +R+K+L Q + V + A K N+++D YK LK LI Q
Sbjct: 61 QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKVELTINKDNCLP 518
L +L E V++RC + D+ LVE +LD Y +K + I D LP
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVDDVHLP 172
>sp|Q9SWE7|VATE_CITLI Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit) (CLVE-1)
Length = 230
Score = 129 bits (323), Expect = 6e-30
Identities = 63/159 (39%), Positives = 104/159 (65%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
+ + DV KQI+ M+ FI QEA+EK +EI+ A+EEF IEK +LV+ ++ K+ + + ++EK
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++E RKKI++S +N +R+K+L Q + V +++ A K + N++ D YK+ LK LI Q
Sbjct: 61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEM 479
L +L E V++RC + D LVE +L+ Y K ++
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159
>sp|Q9MB46|VATE_CITUN Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit)
Length = 230
Score = 129 bits (323), Expect = 6e-30
Identities = 63/159 (39%), Positives = 104/159 (65%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
+ + DV KQI+ M+ FI QEA+EK +EI+ A+EEF IEK +LV+ ++ K+ + + ++EK
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
++E RKKI++S +N +R+K+L Q + V +++ A K + N++ D YK+ LK LI Q
Sbjct: 61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEM 479
L +L E V++RC + D LVE +L+ Y K ++
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159
>sp|Q39258|VATE_ARATH Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar
proton pump E subunit)
Length = 230
Score = 128 bits (322), Expect = 8e-30
Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Frame = +3
Query: 3 LTNDDVQKQIKNMISFIEQEAKEKVDEINSKADEEFEIEKSRLVQDQRSKMNEFFSKEEK 182
+ + DV +QI+ M+ FI QEA+EK +EI+ A+EEF IEK +LV+ ++ K+ + + K+EK
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 183 KLEQRKKIQHSNMMNQARLKILGCQQEHVKDVLTEAQKRLHNLTNDPQKYKETLKRLITQ 362
+ + RKKI +S +N +R+K+L Q + V + +A K L N++ D YK+ LK LI Q
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 363 GLFQLLEAKVIIRCCRGDIRLVEVILDECASAYEAKTEMKV-ELTINKDNCLP 518
L +L E V++RC D+ LVE +LD+ Y K ++ E+ ++ LP
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLP 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,821,428
Number of Sequences: 369166
Number of extensions: 900751
Number of successful extensions: 4645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4546
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)