Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H08
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O81146|PSA6A_ARATH Proteasome subunit alpha type 6-A (Pr... 109 2e-24
sp|O81147|PSA6B_ARATH Proteasome subunit alpha type 6-B (Pr... 108 4e-24
sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type 6 (20S p... 108 5e-24
sp|P60900|PSA6_HUMAN Proteasome subunit alpha type 6 (Prote... 107 6e-24
sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type 6 (Prote... 107 6e-24
sp|O48551|PSA6_SOYBN Proteasome subunit alpha type 6 (20S p... 105 4e-23
sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S p... 103 2e-22
sp|Q9LSU3|PSA6_ORYSA Proteasome subunit alpha type 6 (20S p... 100 1e-21
sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Prote... 87 9e-18
sp|O94517|PSA6_SCHPO Probable proteasome subunit alpha type 6 83 2e-16
>sp|O81146|PSA6A_ARATH Proteasome subunit alpha type 6-A (Proteasome subunit alpha type 1)
(20S proteasome alpha subunit A-1) (Proteasome component
1)
Length = 246
Score = 109 bits (273), Expect = 2e-24
Identities = 52/102 (50%), Positives = 73/102 (71%)
Frame = +2
Query: 23 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 202
E N PLLYK DP+G GH+A + G K+ EA ++LEKK+++N FT DE V+ AI+ L
Sbjct: 145 EENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQS 204
Query: 203 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
V DFKA E+E+G+V + P FR L+ E+I+E+LTAI+E+D
Sbjct: 205 VLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHLTAISERD 246
>sp|O81147|PSA6B_ARATH Proteasome subunit alpha type 6-B (Proteasome subunit alpha type 1)
(20S proteasome alpha subunit A-2)
Length = 246
Score = 108 bits (270), Expect = 4e-24
Identities = 52/98 (53%), Positives = 70/98 (71%)
Frame = +2
Query: 35 PLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSHVQSV 214
PLLYK DP+G GH+A + G K+ EA ++LEKK+++N FT DE V+ AI+ L V
Sbjct: 149 PLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQE 208
Query: 215 DFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
DFKA E+E+G+V D P FR L E+IDE+LTAI+E+D
Sbjct: 209 DFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD 246
>sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type 6 (20S proteasome subunit alpha-1)
Length = 244
Score = 108 bits (269), Expect = 5e-24
Identities = 53/109 (48%), Positives = 81/109 (74%)
Frame = +2
Query: 2 IALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEV 181
+ ++YD E P +YKTDP+G+ +G +A +VGAK LEA SYLEKK + N + ++A+++
Sbjct: 139 VLIAYDNEIG-PSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPN--LSEEKAIQL 195
Query: 182 AINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
AI+CLS V ++DFK +EIG+V++ P FR+L + +I+E+LT IAEKD
Sbjct: 196 AISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKIAEKD 244
>sp|P60900|PSA6_HUMAN Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain) (27 kDa prosomal protein) (PROS-27) (p27K)
sp|P60901|PSA6_RAT Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain)
Length = 246
Score = 107 bits (268), Expect = 6e-24
Identities = 48/98 (48%), Positives = 72/98 (73%)
Frame = +2
Query: 35 PLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSHVQSV 214
P +YK DP+G+ G +A A G KQ E+ S+LEKK++K ++T ++ VE AI CLS V S+
Sbjct: 149 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 208
Query: 215 DFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
DFK E+E+G+VT + P FR+L++ +ID +L A+AE+D
Sbjct: 209 DFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
>sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain)
Length = 246
Score = 107 bits (268), Expect = 6e-24
Identities = 48/98 (48%), Positives = 72/98 (73%)
Frame = +2
Query: 35 PLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSHVQSV 214
P +YK DP+G+ G +A A G KQ E+ S+LEKK++K ++T ++ VE AI CLS V S+
Sbjct: 149 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 208
Query: 215 DFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
DFK E+E+G+VT + P FR+L++ +ID +L A+AE+D
Sbjct: 209 DFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
>sp|O48551|PSA6_SOYBN Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1) (Proteasome iota
subunit)
Length = 246
Score = 105 bits (261), Expect = 4e-23
Identities = 52/109 (47%), Positives = 75/109 (68%)
Frame = +2
Query: 2 IALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEV 181
+ L D E+ P LYK DP+G GH+A + G K EA ++LEKK++ + FT +E V+
Sbjct: 139 MVLGIDDEYG-PQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQT 197
Query: 182 AINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
AI+ L V DFKA E+E+G+V +D P FRVL+ ++IDE+LTAI+E+D
Sbjct: 198 AISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD 246
>sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1)
Length = 246
Score = 103 bits (256), Expect = 2e-22
Identities = 50/110 (45%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Frame = +2
Query: 2 IALSYDIEFNK-PLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVE 178
+A+ I+ K P L+K DP+G GH+A + G+K+ EA ++LEKK++ + F+ +E V+
Sbjct: 137 VAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQ 196
Query: 179 VAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
AI+ L V DFKA E+E+G+V ++ P FRVL+ E+IDE+LTAI+E+D
Sbjct: 197 TAISALQSVLQEDFKASEIEVGVVKKEDPIFRVLTTEEIDEHLTAISERD 246
>sp|Q9LSU3|PSA6_ORYSA Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1)
Length = 246
Score = 100 bits (248), Expect = 1e-21
Identities = 49/109 (44%), Positives = 76/109 (69%)
Frame = +2
Query: 2 IALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEV 181
+ L YD E N L +K DP+G GH+A + G K+ EA ++LEKK++ + +F+ +E V++
Sbjct: 139 MVLGYDEEKNAQL-FKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQI 197
Query: 182 AINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
AI+ L V DFKA E+E+G+V +D FR L+ E+ID++LTAI+E+D
Sbjct: 198 AISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD 246
>sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Proteasome subunit alpha 1)
Length = 246
Score = 87.4 bits (215), Expect = 9e-18
Identities = 43/107 (40%), Positives = 69/107 (64%)
Frame = +2
Query: 8 LSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAI 187
+SYD E P +Y+ DP+G+ G + V+VG KQL A S+LEKK++K E T EA+E+AI
Sbjct: 141 ISYDDE-KGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAI 199
Query: 188 NCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
L +D ++ +LE+ +VT+D F L+ ++++ +L IA +D
Sbjct: 200 EALQTSLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVEHHLNQIANRD 246
>sp|O94517|PSA6_SCHPO Probable proteasome subunit alpha type 6
Length = 244
Score = 82.8 bits (203), Expect = 2e-16
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Frame = +2
Query: 35 PLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNK-EFTLDEAVEVAINCLSHVQS 211
P L+K DP+GF G++A + G KQ E ++LEK+ +K+ L + VE I L S
Sbjct: 147 PSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLS 206
Query: 212 VDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 328
DFK+ EL+IG+V D P FRVLS E+I+ +L +IAEKD
Sbjct: 207 TDFKSTELQIGVVEDDKP-FRVLSVEEIEAHLQSIAEKD 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,456,108
Number of Sequences: 369166
Number of extensions: 658663
Number of successful extensions: 1925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)