Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_G19
(804 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41116|RL8_XENLA 60S ribosomal protein L8 409 e-114
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 407 e-113
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 406 e-113
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 404 e-112
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 404 e-112
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 397 e-110
sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 385 e-107
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 385 e-107
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 384 e-106
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 383 e-106
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 409 bits (1050), Expect = e-114
Identities = 188/253 (74%), Positives = 224/253 (88%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVFKAH KHRKGAAKLRA D+AERNG++KGIV+DIIHDPGRGAPLAK
Sbjct: 1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAK 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK
Sbjct: 61 VAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKP 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+L
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AA
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
Query: 728 RRTGLLRGTKVIK 766
RRTG LRGTK ++
Sbjct: 241 RRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 407 bits (1046), Expect = e-113
Identities = 187/253 (73%), Positives = 224/253 (88%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVFKAH KHRKGAAKLRA D+AER+G++KGIV+DIIHDPGRGAPLAK
Sbjct: 1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK
Sbjct: 61 VAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKP 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+L
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AA
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
Query: 728 RRTGLLRGTKVIK 766
RRTG LRGTK ++
Sbjct: 241 RRTGRLRGTKTVQ 253
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 406 bits (1043), Expect = e-113
Identities = 187/253 (73%), Positives = 224/253 (88%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVF+AH KHRKGAA+LRA D+AER+G++KGIV+DIIHDPGRGAPLAK
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+L
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AA
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
Query: 728 RRTGLLRGTKVIK 766
RRTG LRGTK ++
Sbjct: 241 RRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 404 bits (1039), Expect = e-112
Identities = 186/253 (73%), Positives = 223/253 (88%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVF+AH KHRKGAA+LRA D+AER+G++KGIV+DIIHDPGRGAPLAK
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+L
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAV 240
Query: 728 RRTGLLRGTKVIK 766
RRTG LRGTK ++
Sbjct: 241 RRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 404 bits (1037), Expect = e-112
Identities = 186/253 (73%), Positives = 223/253 (88%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVFKAH KHRKGAAKLR D+AER+G++KGIV+DIIHDPGRGAPLAK
Sbjct: 1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY++KK + FIAAEG+ TGQF+YCGKKA++N+GNVLP+ ++PEGT++C LEEK
Sbjct: 61 VMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+L
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AA
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
Query: 728 RRTGLLRGTKVIK 766
RRTG LRGTK ++
Sbjct: 241 RRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 397 bits (1021), Expect = e-110
Identities = 185/253 (73%), Positives = 220/253 (86%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVFKAH KHRKGAAKLR D+AER+G++KGIV+DIIHDPGRG PLAK
Sbjct: 1 MGRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAK 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY++KK + FIAAEG+ TGQFV+CGKKA++N+GNVLP+ +PEGT+IC LEEK
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKP 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+L
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYK KRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AA
Sbjct: 181 KAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAA 240
Query: 728 RRTGLLRGTKVIK 766
RRTG LRGTK ++
Sbjct: 241 RRTGRLRGTKTVQ 253
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8
Length = 256
Score = 385 bits (988), Expect = e-107
Identities = 179/250 (71%), Positives = 213/250 (85%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVFKAH K RKGAAKLR+ D+AER+G+++G+V+DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY+YK + FIA EGM TGQFVYCG+KA + +GNV+P+ +PEGT+ICNLEEK+
Sbjct: 61 VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRGR+AR SGN A +++HN +T KTRVKLPSG KK++ S+ RAM+GIVAGGGRI+KP+L
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYK KRN WP+VRGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AA
Sbjct: 181 KAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 240
Query: 728 RRTGLLRGTK 757
RRTG +RG K
Sbjct: 241 RRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 385 bits (988), Expect = e-107
Identities = 182/250 (72%), Positives = 211/250 (84%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVF AHTK RKG KLRA DYAER+G+LKG V+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAV 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPYK+ Q FIAAEGM TGQFVYCGK+A++ +GNVLPI +PEGT++CNLEEK+
Sbjct: 61 VHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKT 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++AR SGN A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+L
Sbjct: 121 GDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAY KYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AA
Sbjct: 181 KAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAA 240
Query: 728 RRTGLLRGTK 757
RRTG +RG K
Sbjct: 241 RRTGRIRGGK 250
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 384 bits (985), Expect = e-106
Identities = 180/250 (72%), Positives = 210/250 (84%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVF +HTK RKGA KLR+ DYAER+G++KG+V+DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPYK+K + FIA EG+ TGQFVYCGKKA + VGNV+P+ ++PEGT++CNLEEK
Sbjct: 61 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRGR+ARASGN A ++ HN + +TRVKLPSG KK+L SS R M+GIVAGGGRI+KP+L
Sbjct: 121 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYK KRNCWP VRGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AA
Sbjct: 181 KAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 240
Query: 728 RRTGLLRGTK 757
RRTG +RG K
Sbjct: 241 RRTGRIRGGK 250
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 383 bits (983), Expect = e-106
Identities = 178/250 (71%), Positives = 213/250 (85%)
Frame = +2
Query: 8 MGRVILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAK 187
MGRVI QRKG GSVF+AHTK RKG KLR DYAER+G+LKG+V+ II DPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAV 60
Query: 188 VEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKS 367
V F+DPY+++ Q FIAAEGM TGQFVYCG++A++ +GNV+PI +PEGT++CNLEEK+
Sbjct: 61 VNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKT 120
Query: 368 GDRGRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPML 547
GDRG++AR SGN A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+L
Sbjct: 121 GDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPIL 180
Query: 548 KAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAA 727
KAGRAYHKYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AA
Sbjct: 181 KAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAA 240
Query: 728 RRTGLLRGTK 757
RRTG +RG K
Sbjct: 241 RRTGRIRGGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,734,136
Number of Sequences: 369166
Number of extensions: 1978607
Number of successful extensions: 5669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5267
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)