Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_G11
(769 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19503|HM40_CAEEL Homeobox protein ceh-40 55 2e-07
sp|Q9BYU1|PBX4_HUMAN Pre-B-cell leukemia transcription fact... 52 1e-06
sp|P41779|HM20_CAEEL Homeobox protein ceh-20 51 4e-06
sp|Q99NE9|PBX4_MOUSE Pre-B-cell leukemia transcription fact... 51 4e-06
sp|P41778|PBX1_MOUSE Pre-B-cell leukemia transcription fact... 50 7e-06
sp|P46640|KNAT2_ARATH Homeobox protein knotted-1-like 2 (KN... 50 9e-06
sp|P40426|PBX3_HUMAN Pre-B-cell leukemia transcription fact... 49 1e-05
sp|O35317|PBX3_MOUSE Pre-B-cell leukemia transcription fact... 49 1e-05
sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 (Meis1-related... 48 3e-05
sp|P40427|EXD_DROME Homeobox protein extradenticle 48 3e-05
>sp|Q19503|HM40_CAEEL Homeobox protein ceh-40
Length = 329
Score = 55.5 bits (132), Expect = 2e-07
Identities = 23/76 (30%), Positives = 48/76 (63%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + ++++ +I+ ++ NI+ PYPS +K+ +A++ I V+QV++WF N+R R
Sbjct: 185 LDARRKRRNFSKTSTEILNEYFLANINHPYPSEEVKQALAMQCNISVAQVSNWFGNKRIR 244
Query: 593 SDNTKPKKNRKQLQVR 640
T K ++ + R
Sbjct: 245 YKKTMAKNEDERRENR 260
>sp|Q9BYU1|PBX4_HUMAN Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4)
Length = 330
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/75 (30%), Positives = 48/75 (64%)
Frame = +2
Query: 410 LLEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRN 589
LL+ ++K + ++ A +++ ++ ++++ PYPS K+++A +G + +SQV++WF N+R
Sbjct: 163 LLDARRKRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRI 222
Query: 590 RSDNTKPKKNRKQLQ 634
R KKN + Q
Sbjct: 223 RY-----KKNMGKFQ 232
>sp|P41779|HM20_CAEEL Homeobox protein ceh-20
Length = 338
Score = 50.8 bits (120), Expect = 4e-06
Identities = 25/81 (30%), Positives = 46/81 (56%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + ++ A +++ ++ ++ PYPS K+D+A + I VSQV++WF N+R R
Sbjct: 186 LDARRKRRNFSKQATEVLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQVSNWFGNKRIR 245
Query: 593 SDNTKPKKNRKQLQVRLYKFA 655
KKN + Q +A
Sbjct: 246 Y-----KKNMAKAQEEASMYA 261
>sp|Q99NE9|PBX4_MOUSE Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4)
Length = 378
Score = 50.8 bits (120), Expect = 4e-06
Identities = 24/74 (32%), Positives = 45/74 (60%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + ++ A ++ ++ +++ PYPS K+++A +G I VSQV++WF N+R R
Sbjct: 213 LDARRKRRNFSKQATDVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIR 272
Query: 593 SDNTKPKKNRKQLQ 634
KKN + Q
Sbjct: 273 Y-----KKNTGKFQ 281
>sp|P41778|PBX1_MOUSE Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1)
sp|P40424|PBX1_HUMAN Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1)
(Homeobox protein PRL)
Length = 430
Score = 50.1 bits (118), Expect = 7e-06
Identities = 21/60 (35%), Positives = 40/60 (66%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + N+ A +I+ ++ +++ PYPS K+++A + I VSQV++WF N+R R
Sbjct: 231 LDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 290
>sp|P46640|KNAT2_ARATH Homeobox protein knotted-1-like 2 (KNAT2) (ATK1)
Length = 310
Score = 49.7 bits (117), Expect = 9e-06
Identities = 39/148 (26%), Positives = 72/148 (48%)
Frame = +2
Query: 176 FLKNFDVENIKITNQTSSSTALTQSKNVIPDGDLRSIINSIKPFDTDNSQSNKTADKLIS 355
F+ +++ + +S+TAL+ V D +LR + D+SQ ++ D+ +
Sbjct: 156 FINKIEMQLQNLCTGPASATALSDDGAVSSDEELREDDD----IAADDSQQ-RSNDRDLK 210
Query: 356 DSLEKIXXXXXXXXXXDFLLEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMAL 535
D L + +F +K+KK K E+ +++ W +N +PYP+ K +A
Sbjct: 211 DQLLRKFGSHISSLKLEFS-KKKKKGKLpreARQALLDWWNVHN-KWPYPTEGDKISLAE 268
Query: 536 EGKIGVSQVNSWFANRRNRSDNTKPKKN 619
E + Q+N+WF N+R R + KP +N
Sbjct: 269 ETGLDQKQINNWFINQRKR--HWKPSEN 294
>sp|P40426|PBX3_HUMAN Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3)
Length = 434
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/88 (28%), Positives = 50/88 (56%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + ++ A +I+ ++ +++ PYPS K+++A + I VSQV++WF N+R R
Sbjct: 233 LDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIR 292
Query: 593 SDNTKPKKNRKQLQVRLYKFAQELEINS 676
KKN + Q +A + + +
Sbjct: 293 Y-----KKNIGKFQEEANLYAAKTAVTA 315
>sp|O35317|PBX3_MOUSE Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3)
Length = 434
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/88 (28%), Positives = 50/88 (56%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + ++ A +I+ ++ +++ PYPS K+++A + I VSQV++WF N+R R
Sbjct: 233 LDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIR 292
Query: 593 SDNTKPKKNRKQLQVRLYKFAQELEINS 676
KKN + Q +A + + +
Sbjct: 293 Y-----KKNIGKFQEEANLYAAKTAVTA 315
>sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 (Meis1-related protein 1)
Length = 477
Score = 48.1 bits (113), Expect = 3e-05
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +2
Query: 416 EKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
++QKK + A IM +W ++ PYPS KK +A + + + QVN+WF N R R
Sbjct: 275 KRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 333
>sp|P40427|EXD_DROME Homeobox protein extradenticle
Length = 376
Score = 48.1 bits (113), Expect = 3e-05
Identities = 24/78 (30%), Positives = 46/78 (58%)
Frame = +2
Query: 413 LEKQKKNKPLNESAIKIMESWYTNNIDFPYPSNAIKKDMALEGKIGVSQVNSWFANRRNR 592
L+ ++K + ++ A +I+ ++ +++ PYPS K+++A + I VSQV++WF N+R R
Sbjct: 236 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIR 295
Query: 593 SDNTKPKKNRKQLQVRLY 646
K + Q + LY
Sbjct: 296 ---YKKNIGKAQEEANLY 310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,792,204
Number of Sequences: 369166
Number of extensions: 1355943
Number of successful extensions: 4775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4768
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)