Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_G07
(619 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor 103 4e-22
sp|P05997|CO5A2_HUMAN Collagen alpha 2(V) chain precursor 102 1e-21
sp|Q01149|CO1A2_MOUSE Collagen alpha 2(I) chain precursor 100 5e-21
sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor 99 9e-21
sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor 98 1e-20
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 98 2e-20
sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor 97 3e-20
sp|P02452|CO1A1_HUMAN Collagen alpha 1(I) chain precursor 96 6e-20
sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor 95 1e-19
sp|Q9XSJ7|CO1A1_CANFA Collagen alpha 1(I) chain precursor 95 2e-19
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
Length = 526
Score = 103 bits (257), Expect = 4e-22
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 13/215 (6%)
Frame = +1
Query: 7 EDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKDA 186
+D ++ L L+ ++ L P GS+ PAR+C D++ + S+G Y+IDPN G DA
Sbjct: 291 KDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDA 350
Query: 187 IYVFCNFEKLETCI--EPE---VSNYKKTSYMKSHSSWFSILASLNKQVSYKI----PKE 339
I V+C+F ETCI +PE V N+ K+S K H W + Q Y + KE
Sbjct: 351 IKVYCDFSTGETCIRAQPENISVKNWYKSSKAKKH-VWLGETINGGTQFEYNVEGVTSKE 409
Query: 340 ---QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNNDD 510
QL F++L + SQN T C N S +++E N +L N + V +
Sbjct: 410 MATQLAFMRLLANHASQNITYHCKN----SIAYMDEETGNLNKAVILQGSNDVELVAEGN 465
Query: 511 DLFQYQIIEDNC-KGESSSGRVVIKVELDRPRRLP 612
F Y ++ D C K + G+ +I+ + ++P RLP
Sbjct: 466 SRFTYTVLVDGCTKKTNEWGKTIIEYKTNKPSRLP 500
>sp|P05997|CO5A2_HUMAN Collagen alpha 2(V) chain precursor
Length = 1496
Score = 102 bits (253), Expect = 1e-21
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Frame = +1
Query: 1 NDEDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWK 180
N D + L LS+ ++ + P GSK +PAR+C D++ ++ K +G Y+IDPN G +
Sbjct: 1259 NKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVE 1318
Query: 181 DAIYVFCNFEKLETCIEPEVSNYKKTSYMKSHSS-----WFSILASLNKQVSY------K 327
DAI V+CN E ETCI S+ + ++ S S W+ + + Q +Y
Sbjct: 1319 DAIKVYCNMETGETCISANPSSVPRKTWWASKSPDNKPVWYGLDMNRGSQFAYGDHQSPN 1378
Query: 328 IPKEQLVFLQLSSESTSQNFTLSCDN-IGLVSDNSVNQEN----KYNNSLQLLGDDNQIL 492
Q+ FL+L S+ SQN T C N +G + D + N + K N L + + N
Sbjct: 1379 TAITQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGN--- 1435
Query: 493 TVNNDDDLFQYQIIEDNC-KGESSSGRVVIKVELDRPRRLPI 615
F+Y +++D C K + G+ V + RLPI
Sbjct: 1436 ------IRFRYIVLQDTCSKRNGNVGKTVFEYRTQNVARLPI 1471
>sp|Q01149|CO1A2_MOUSE Collagen alpha 2(I) chain precursor
Length = 1372
Score = 99.8 bits (247), Expect = 5e-21
Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 12/214 (5%)
Frame = +1
Query: 7 EDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKDA 186
+D ++ L L+ ++ L P GS+ PAR+C D++ + ++ Y+IDPN G DA
Sbjct: 1137 KDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDA 1196
Query: 187 IYVFCNFEKLETCIEPE-VSNYKKTSYMKSHSS---WFSILASLNKQVSYKI----PKE- 339
I V+C+F ETCI+ + V+ K SY ++ ++ W + Q Y + KE
Sbjct: 1197 IKVYCDFSTGETCIQAQPVNTPAKNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEM 1256
Query: 340 --QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNNDDD 513
QL F++L + SQN T C N S +++E N LL N + V +
Sbjct: 1257 ATQLAFMRLLANRASQNITYHCKN----SIAYLDEETGSLNKAVLLQGSNDVELVAEGNS 1312
Query: 514 LFQYQIIEDNCKGESSS-GRVVIKVELDRPRRLP 612
F Y ++ D C +++ G+ +I+ + ++P RLP
Sbjct: 1313 RFTYSVLVDGCSKKTNEWGKTIIEYKTNKPSRLP 1346
>sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor
Length = 1366
Score = 99.0 bits (245), Expect = 9e-21
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 13/216 (6%)
Frame = +1
Query: 7 EDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKDA 186
+D ++ L L+ ++ L P GS+ PAR+C D++ + S+G Y+IDPN G DA
Sbjct: 1131 KDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDA 1190
Query: 187 IYVFCNFEKLETCI--EPE---VSNYKKTSYMKSHSSWFSILASLNKQVSYKI----PKE 339
I V+C+F ETCI +PE N+ + S +K H W + Q Y + KE
Sbjct: 1191 IKVYCDFSTGETCIRAQPENIPAKNWYRNSKVKKH-IWLGETINGGTQFEYNVEGVTTKE 1249
Query: 340 ---QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNNDD 510
QL F++L + SQN T C N S +++E +L N + V +
Sbjct: 1250 MATQLAFMRLLANHASQNITYHCKN----SIAYMDEETGNLKKAVILQGSNDVELVAEGN 1305
Query: 511 DLFQYQIIEDNCKGESSSGR-VVIKVELDRPRRLPI 615
F Y ++ D C +++ R +I+ + ++P RLPI
Sbjct: 1306 SRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPI 1341
>sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor
Length = 1364
Score = 98.2 bits (243), Expect = 1e-20
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 13/216 (6%)
Frame = +1
Query: 7 EDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKDA 186
+D ++ L L+ ++ L P GS+ PAR+C D++ + S+G Y+IDPN G DA
Sbjct: 1129 KDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDA 1188
Query: 187 IYVFCNFEKLETCI--EPE---VSNYKKTSYMKSHSSWFSILASLNKQVSYKI----PKE 339
I V+C+F ETCI +PE V N+ + S K H W + Q Y + KE
Sbjct: 1189 IKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAKKH-VWVGETINGGTQFEYNVEGVTTKE 1247
Query: 340 ---QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNNDD 510
QL F++L + SQN T C N S +++E +L N + V +
Sbjct: 1248 MATQLAFMRLLANHASQNITYHCKN----SIAYMDEETGNLKKAVILQGSNDVELVAEGN 1303
Query: 511 DLFQYQIIEDNCKGESSS-GRVVIKVELDRPRRLPI 615
F Y ++ D C +++ + +I+ + ++P RLPI
Sbjct: 1304 SRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPI 1339
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 97.8 bits (242), Expect = 2e-20
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Frame = +1
Query: 7 EDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKDA 186
+D ++ + L++ ++NL P GSK PAR+C DI+ + + S+G Y+IDPN G DA
Sbjct: 1121 KDYEVDATIKSLNSQIENLLTPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCIADA 1180
Query: 187 IYVFCNFEKLETCIEPEVSNYKKTSYMKSHSS----WF-------SILASLNKQVSYKIP 333
I +C+F TCI P + + ++ +S + WF + A ++ +S +
Sbjct: 1181 IKAYCDFSTGHTCIHPHPESIARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSM 1240
Query: 334 KEQLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNNDDD 513
QL F++L + +QN T C N D EN LL N + +
Sbjct: 1241 ATQLAFMRLLANQATQNITYHCKNSVAYMDG----ENGNLKKAVLLQGSNDVELRAEGNS 1296
Query: 514 LFQYQIIEDNCKGESSS-GRVVIKVELDRPRRLPI 615
F + ++ED C + + VI+ ++P RLPI
Sbjct: 1297 RFTFNVLEDGCTRHTGQWSKTVIEYRTNKPSRLPI 1331
>sp|O42350|CO1A2_RANCA Collagen alpha 2(I) chain precursor
Length = 1355
Score = 97.1 bits (240), Expect = 3e-20
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 14/217 (6%)
Frame = +1
Query: 7 EDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKDA 186
+D ++ L L+ ++ + P GS+ PAR+C D++ + ++G Y+IDPN G DA
Sbjct: 1118 KDYEVDATLKSLNQQIEVILTPEGSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTSDA 1177
Query: 187 IYVFCNFEKLETCIEPEVSN------YKKTSYMKSHSSWFSILASLNKQVSY-------K 327
I VFC+F ETCI Y TS WF + + Q Y K
Sbjct: 1178 IRVFCDFSSGETCIHANPDEITQKNWYINTSNKDKKHLWFGEILNGGTQFEYHDEGLTAK 1237
Query: 328 IPKEQLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNND 507
QL F++L + SQN T C N S +++E +L N +
Sbjct: 1238 DMATQLAFMRLLANQASQNITYHCKN----SIAYMDEETGNLKKAVILQGSNDVELRAEG 1293
Query: 508 DDLFQYQIIEDNC-KGESSSGRVVIKVELDRPRRLPI 615
+ F Y ++ED C K G+ VI+ ++P RLPI
Sbjct: 1294 NTRFTYSVLEDGCTKHTGEWGKTVIEYRTNKPSRLPI 1330
>sp|P02452|CO1A1_HUMAN Collagen alpha 1(I) chain precursor
Length = 1464
Score = 96.3 bits (238), Expect = 6e-20
Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 14/218 (6%)
Frame = +1
Query: 4 DEDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKD 183
D D ++ L LS ++N+ P GS+ PAR+C D++ +++ +G Y+IDPN G D
Sbjct: 1226 DRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLD 1285
Query: 184 AIYVFCNFEKLETCIEP-EVSNYKKTSYMKSHSS-----WFSILASLNKQVSY----KIP 333
AI VFCN E ETC+ P + S +K Y+ + WF + Q Y P
Sbjct: 1286 AIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDP 1345
Query: 334 KE---QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNN 504
+ QL FL+L S SQN T C N D K LL N+I
Sbjct: 1346 ADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKK----ALLLKGSNEIEIRAE 1401
Query: 505 DDDLFQYQIIEDNCKGESSS-GRVVIKVELDRPRRLPI 615
+ F Y + D C + + G+ VI+ + + RLPI
Sbjct: 1402 GNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTSRLPI 1439
>sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor
Length = 1453
Score = 95.1 bits (235), Expect = 1e-19
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 14/218 (6%)
Frame = +1
Query: 4 DEDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKD 183
D D ++ L LS ++N+ P G++ PAR+C D++ + + +G Y+IDPN G D
Sbjct: 1215 DRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKSGEYWIDPNQGCNLD 1274
Query: 184 AIYVFCNFEKLETCIEPEVSNYKKTSYMKSHSS------WFSILASLNKQVSY----KIP 333
AI V+CN E ETC+ P + + ++ S + WF S Q Y P
Sbjct: 1275 AIKVYCNMETGETCVYPTQATIAQKNWYLSKNPKEKKHVWFGETMSDGFQFEYGGEGSNP 1334
Query: 334 KE---QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNN 504
+ QL FL+L S +QN T C N D+ K LL N+I
Sbjct: 1335 ADVAIQLTFLRLMSTEATQNVTYHCKNSVAYMDHDTGNLKK----ALLLQGANEIEIRAE 1390
Query: 505 DDDLFQYQIIEDNCKGESSS-GRVVIKVELDRPRRLPI 615
+ F Y + ED C + + G+ VI+ + + RLPI
Sbjct: 1391 GNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPI 1428
>sp|Q9XSJ7|CO1A1_CANFA Collagen alpha 1(I) chain precursor
Length = 1460
Score = 94.7 bits (234), Expect = 2e-19
Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 14/218 (6%)
Frame = +1
Query: 4 DEDEDIFEALLRLSTIVDNLFKPPGSKTYPARSCADIQRDYNNKSNGMYYIDPNGGHWKD 183
D D ++ L LS ++N+ P GS+ PAR+C D++ +++ +G Y+IDPN G D
Sbjct: 1222 DRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLD 1281
Query: 184 AIYVFCNFEKLETCI---EPEVSN---YKKTSYMKSHSSWFSILASLNKQVSY----KIP 333
AI VFCN E ETC+ +P+V+ Y + + W+ + Q Y P
Sbjct: 1282 AIKVFCNMETGETCVYPTQPQVAQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSDP 1341
Query: 334 KE---QLVFLQLSSESTSQNFTLSCDNIGLVSDNSVNQENKYNNSLQLLGDDNQILTVNN 504
+ QL FL+L S SQN T C N D K LL N+I
Sbjct: 1342 ADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKK----ALLLQGSNEIEIRAE 1397
Query: 505 DDDLFQYQIIEDNCKGESSS-GRVVIKVELDRPRRLPI 615
+ F Y + D C + + G+ VI+ + + RLPI
Sbjct: 1398 GNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPI 1435
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,222,247
Number of Sequences: 369166
Number of extensions: 1362631
Number of successful extensions: 2941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)