Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_G01-2
(341 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase... 52 6e-07
sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase... 52 6e-07
sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase... 51 9e-07
sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase... 49 3e-06
sp|Q92353|UBP6_SCHPO Probable ubiquitin carboxyl-terminal h... 36 0.024
sp|P57999|ZAN_RABIT Zonadhesin 29 3.0
>sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 494
Score = 51.6 bits (122), Expect = 6e-07
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Frame = +2
Query: 14 SLGRLILSMETAEVPIAPIIPLKHLHEMCPQFATTQVAAPEQGGGSVLMQQDANECWAEI 193
+L L SM+ I PII L+ LH PQFA E+G +QQDANECW ++
Sbjct: 155 ALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFA-------EKGEQGQYLQQDANECWIQM 207
Query: 194 VRSLQKAVYIPQNVDFSDLPESFGS----NGNLNFVDQFLTGKFDVKTVNTEN 340
+R LQ+ + ++ + S S + + +DQF +F+ TE+
Sbjct: 208 MRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 260
>sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 51.6 bits (122), Expect = 6e-07
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Frame = +2
Query: 14 SLGRLILSMETAEVPIAPIIPLKHLHEMCPQFATTQVAAPEQGGGSVLMQQDANECWAEI 193
+L L SM+ I PII L+ LH PQFA E+G +QQDANECW ++
Sbjct: 155 ALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFA-------EKGEQGQYLQQDANECWIQM 207
Query: 194 VRSLQKAVYIPQNVDFSDLPESFGS----NGNLNFVDQFLTGKFDVKTVNTEN 340
+R LQ+ + ++ + S S + + +DQF +F+ TE+
Sbjct: 208 MRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 260
>sp|P40826|UBP14_RABIT Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 50.8 bits (120), Expect = 9e-07
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Frame = +2
Query: 14 SLGRLILSMETAEVPIAPIIPLKHLHEMCPQFATTQVAAPEQGGGSVLMQQDANECWAEI 193
+L L SM+ I PII L+ LH PQFA E+G +QQDANECW ++
Sbjct: 155 ALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFA-------EKGEQGQYLQQDANECWIQM 207
Query: 194 VRSLQKAVYIPQNVDFSDLPESFGS---NGNLNFVDQFLTGKFDVKTVNTEN 340
+R LQ+ + ++ + S + + + +DQF +F+ TE+
Sbjct: 208 MRVLQQKLEAIEDDSVKETDSSAAAVAPSKKKSLIDQFFGVEFETTMKCTES 259
>sp|Q9JMA1|UBP14_MOUSE Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase
14) (Ubiquitin-specific processing protease 14)
(Deubiquitinating enzyme 14)
Length = 493
Score = 49.3 bits (116), Expect = 3e-06
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +2
Query: 14 SLGRLILSMETAEVPIAPIIPLKHLHEMCPQFATTQVAAPEQGGGSVLMQQDANECWAEI 193
+L L SM+ I PII L+ LH PQFA E+G +QQDANECW ++
Sbjct: 155 ALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFA-------EKGEQGQYLQQDANECWIQM 207
Query: 194 VRSLQKAVYIPQN-----VDFSDLPESFGSNGNLNFVDQFLTGKFDVKTVNTEN 340
+R LQ+ + ++ D S P S + +DQ+ +F+ TE+
Sbjct: 208 MRVLQQKLEAIEDDSGRETDSSSAPAVTPSK-KKSLIDQYFGVEFETTMKCTES 260
>sp|Q92353|UBP6_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 6 (Ubiquitin
thiolesterase 6) (Ubiquitin-specific processing protease
6) (Deubiquitinating enzyme 6)
Length = 467
Score = 36.2 bits (82), Expect = 0.024
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +2
Query: 23 RLILSMETAEVPIAPIIPLKHLHEMCPQFATTQVAAPEQGGGSVLMQQDANECWAEIVRS 202
R +L+ + P+ P+ L+ L PQFA + E GG + QQDA ECW+ ++
Sbjct: 142 RTLLNSMQSNAPVTPMRFLQSLRMEYPQFAEM---SRETGGYA---QQDAEECWSFLLSV 195
Query: 203 LQKAV 217
LQ+++
Sbjct: 196 LQRSL 200
>sp|P57999|ZAN_RABIT Zonadhesin
Length = 2282
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 5 FVLSLGRLILSMETAEVPIAPIIPLKHLHEMCPQFATTQVAAPEQG 142
FV+++ ++++ T VP+ P+IP+K L T Q P +G
Sbjct: 299 FVVAMSFILINHGTCHVPVPPVIPIKTL-----VIPTEQPTVPAEG 339
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,078,925
Number of Sequences: 369166
Number of extensions: 675768
Number of successful extensions: 1446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)