Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F17
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another... 49 2e-05
sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another... 45 2e-04
sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346 45 2e-04
sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 39 0.017
sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 39 0.017
sp|Q96PM9|ZN385_HUMAN Zinc finger protein 385 (Hematopoieti... 39 0.022
sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 38 0.037
sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 38 0.037
sp|P10583|GLNA_AZOBR Glutamine synthetase (Glutamate--ammon... 37 0.049
sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 37 0.064
>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 48.9 bits (115), Expect = 2e-05
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTK-----DDLRCDVCRIVGE 295
C IC FSS V A HY GK H K V+ + D C +C
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFN 195
Query: 296 STVQMETHYAGKKH-----QLKMKAFLERVNAGAIAPPMSSRGF-CD-----FNNVEREE 442
V + HY GKKH +LK+ A R+ A+ + +G+ C N++E+ +
Sbjct: 196 DPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQ 255
Query: 443 ANPVDPTRFIQENILPKNLTGSFLNQPDPEPP 538
A+ + F +N PK + S P P
Sbjct: 256 AH---VSGFKHKNQSPKTVASSLGQIPMQRQP 284
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Frame = +2
Query: 125 EFCRICESPFSSKVAALQHYSGKKHKKIAVN---WSSYN-----PVKPIDTKDDLRCDVC 280
+FC +C + F+ V A QHY GKKH+K + Y V C C
Sbjct: 185 KFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTC 244
Query: 281 RIVGESTVQMETHYAGKKHQ 340
+IV S Q + H +G KH+
Sbjct: 245 KIVLNSIEQYQAHVSGFKHK 264
Score = 36.2 bits (82), Expect = 0.11
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKPID--------------TKDDLR 268
C++C + S+ L HY KKH + + + ++ + +KD +
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 269 -CDVCRIVGESTVQMETHYAGKKH--QLKMKAFLERVNA 376
C +C + S V ++HY GK H LK+K +V A
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEA 173
>sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 45.4 bits (106), Expect = 2e-04
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Frame = +2
Query: 125 EFCRICESPFSSKVAALQHYSGKKHKKIAVN---WSSYN-----PVKPIDTKDDLRCDVC 280
+FC +C S F+ A QHY GK+H+K + Y V + C C
Sbjct: 185 KFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTC 244
Query: 281 RIVGESTVQMETHYAGKKHQ 340
+IV S Q + H +G KH+
Sbjct: 245 KIVLNSIEQYQAHVSGFKHK 264
Score = 44.7 bits (104), Expect = 3e-04
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 27/162 (16%)
Frame = +2
Query: 95 INEDVHRLDLE-----------FCRICESPFSSKVAALQHYSGKKH-KKIAVNWSSYNPV 238
I DV RLD + C IC FSS A HY GK H K + + S
Sbjct: 113 IKGDVKRLDSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGA 172
Query: 239 KPIDTKD----DLRCDVCRIVGESTVQMETHYAGKKH-----QLKMKAFLERVNAGAIAP 391
++ D C +C + HY GK+H +LK+ A R+ A++
Sbjct: 173 ALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSD 232
Query: 392 PMSSRGF-CD-----FNNVEREEANPVDPTRFIQENILPKNL 499
+ +G+ C N++E+ +A+ + F +N PK L
Sbjct: 233 LPAGKGYPCKTCKIVLNSIEQYQAH---VSGFKHKNQSPKTL 271
Score = 35.8 bits (81), Expect = 0.14
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDDLR-------------- 268
C++C + S+ L HY KKH + + + ++ I K D++
Sbjct: 75 CKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETI--KGDVKRLDSDQKSSRSKDK 132
Query: 269 ---CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAI 385
C +C + S ++HY GK H +K + A+
Sbjct: 133 NHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAAL 174
>sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346
Length = 310
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Frame = +2
Query: 125 EFCRICESPFSSKVAALQHYSGKKHKKIAVN---WSSYN-----PVKPIDTKDDLRCDVC 280
+FC +C + F+ V A QHY GKKH+K + Y V C C
Sbjct: 201 KFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTC 260
Query: 281 RIVGESTVQMETHYAGKKHQ 340
+IV S Q + H +G KH+
Sbjct: 261 KIVLNSIEQYQAHVSGFKHK 280
Score = 45.1 bits (105), Expect = 2e-04
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 32/168 (19%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKHKK-----------IAVNWSSYNPVKPIDT-------- 253
C IC FSS V A HY GK H K A++ NP T
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQNRE 195
Query: 254 --KDDLRCDVCRIVGESTVQMETHYAGKKH-----QLKMKAFLERVNAGAIAPPMSSRGF 412
D C +C V + HY GKKH +LK+ A R+ A+ + +G+
Sbjct: 196 MIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGY 255
Query: 413 -CD-----FNNVEREEANPVDPTRFIQENILPKNLTGSFLNQPDPEPP 538
C N++E+ +A+ + F +N PK + S P P
Sbjct: 256 PCKTCKIVLNSIEQYQAH---VSGFKHKNQSPKTVASSLGQIPMQRQP 300
Score = 38.1 bits (87), Expect = 0.029
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKPID--------------TKDDLR 268
C++C + S+ L HY KKH + + + ++ + +KD +
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 269 -CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEA 445
C +C + S V ++HY GK H +K + A++ +++ +
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQNR 194
Query: 446 NPVDPTRF 469
+DP +F
Sbjct: 195 EMIDPDKF 202
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3703
Score = 38.9 bits (89), Expect = 0.017
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKH---KKIAVNWSSYNPVKPIDTKDD--LRCDVCRIVGE 295
C +C+ F+ K L HY+ H K A+ S+ +P + D+ +C+ C +
Sbjct: 1547 CTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAYS 1606
Query: 296 STVQMETHYAGKKHQLKMKA 355
+ +E H HQ K +A
Sbjct: 1607 QSSTLEIHMRSVLHQTKARA 1626
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3726
Score = 38.9 bits (89), Expect = 0.017
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKH---KKIAVNWSSYNPVKPIDTKDD--LRCDVCRIVGE 295
C +C+ F+ K L HY+ H K A+ S+ +P + D+ +C+ C +
Sbjct: 1557 CTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAYS 1616
Query: 296 STVQMETHYAGKKHQLKMKA 355
+ +E H HQ K +A
Sbjct: 1617 QSSTLEIHMRSVLHQTKARA 1636
Score = 30.4 bits (67), Expect = 6.0
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 155 SSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKK 334
S+ AA + I +W + +P KP TK RC+VC + H +K
Sbjct: 770 SAGAAAAAAAAAAAAANIGSSWGAPSPTKP-KTKPTWRCEVCDYETNVARNLRIHMTSEK 828
Query: 335 HQLKM 349
H M
Sbjct: 829 HMHNM 833
>sp|Q96PM9|ZN385_HUMAN Zinc finger protein 385 (Hematopoietic zinc finger protein)
(Retinal zinc finger protein)
Length = 366
Score = 38.5 bits (88), Expect = 0.022
Identities = 45/188 (23%), Positives = 65/188 (34%), Gaps = 14/188 (7%)
Frame = +2
Query: 2 GVSKSGEPNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQH 181
GV+K GE P+ A E K+ L +C +C+ +S H
Sbjct: 152 GVTK-GEGGTPAPASLPGGSKEEEEKAKR-----------LLYCALCKVAVNSLSQLEAH 199
Query: 182 YSGKKHKKIAVNWSSYNPVK------------PIDTKDD--LRCDVCRIVGESTVQMETH 319
G KHK I S P+K P D C++C + S VQ++ H
Sbjct: 200 NKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQH 259
Query: 320 YAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENILPKNL 499
+ ++H R P+ SR + R F +E LPK+L
Sbjct: 260 ISSRRH---------RDGVAGKPNPLLSR-----HKKSRGAGELAGTLTFSKE--LPKSL 303
Query: 500 TGSFLNQP 523
G L P
Sbjct: 304 AGGLLPSP 311
Score = 30.4 bits (67), Expect = 6.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 263 LRCDVCRIVGESTVQMETHYAGKKHQLKMK 352
+ C++C+I S Q E HY G +H ++K
Sbjct: 54 ISCNICQIRFNSQSQAEAHYKGNRHARRVK 83
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533
Length = 482
Score = 37.7 bits (86), Expect = 0.037
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +2
Query: 155 SSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKK 334
SS V +++ + AV ++ P K + C+VC++ S Q E HY G K
Sbjct: 133 SSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSK 192
Query: 335 HQLKMKAFLERVNAGAIAPPMSS 403
H K+KA N + P S
Sbjct: 193 HAKKVKALEATKNKPKMVPSKDS 215
Score = 36.2 bits (82), Expect = 0.11
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 92 EINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDDLRC 271
+ +++ ++ FC +C +S A HY GK H+K S P P+ L
Sbjct: 23 QFSKEKKKILFSFCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLSDGQPPPPVQGSVPLLA 82
Query: 272 DVCRIVG 292
C G
Sbjct: 83 GPCPCPG 89
Score = 34.7 bits (78), Expect = 0.32
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKH-KKIAVNWSSYNPVKPIDTKDDLR----CDVCRIVGE 295
C +C+ F+S A HY G KH KK+ ++ N K + +KD + C + G+
Sbjct: 171 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKANPSCSIRPGTGD 230
Query: 296 STVQME 313
S+ + E
Sbjct: 231 SSDKSE 236
Score = 34.7 bits (78), Expect = 0.32
Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 17/159 (10%)
Frame = +2
Query: 98 NEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDD----- 262
+E+ L +C +C+ +S H +G KHK + + P+K
Sbjct: 288 SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSRLKVQ 347
Query: 263 ------------LRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSR 406
C++C + S +Q++ H + ++H+ +RV + P S
Sbjct: 348 NGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHK-------DRVAGKPLKPKYS-- 398
Query: 407 GFCDFNNVEREEANPVDPTRFIQENILPKNLTGSFLNQP 523
+N ++R + + + + L K L +FL+ P
Sbjct: 399 ---PYNKLQRSPS--ILAAKLAFQKDLMKPLAPTFLSSP 432
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 269 CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPM 397
C+VC I S Q + HY GK H+ ++K +++ G PP+
Sbjct: 36 CEVCNIQLNSAAQAQVHYDGKSHRKRVK----QLSDGQPPPPV 74
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533
Length = 471
Score = 37.7 bits (86), Expect = 0.037
Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 17/184 (9%)
Frame = +2
Query: 23 PNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHK 202
P +T+P+KS+ +V+ +E+ L +C +C+ +S H +G KHK
Sbjct: 255 PPGAATSPSKSTNGAPGTVVE----SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 310
Query: 203 KIAVNWSSYNPVKPID-----------------TKDDLRCDVCRIVGESTVQMETHYAGK 331
+ + P+K C++C + S +Q++ H + +
Sbjct: 311 TMVEARNGAGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSR 370
Query: 332 KHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENILPKNLTGSF 511
+H+ +RV + P S +N ++R + F ++ + P L +F
Sbjct: 371 RHK-------DRVAGKPLKPKYS-----PYNKLQRSPSILAAKLAFQKDMMKP--LAPAF 416
Query: 512 LNQP 523
L+ P
Sbjct: 417 LSSP 420
Score = 37.4 bits (85), Expect = 0.049
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +2
Query: 155 SSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKK 334
SS V +++ + AV ++ P K + C+VC++ S Q E HY G K
Sbjct: 121 SSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSK 180
Query: 335 HQLKMKAFLERVNAGAIAPPMSS 403
H K+KA N + P S
Sbjct: 181 HAKKVKALDATKNKPKMVPSKDS 203
Score = 36.2 bits (82), Expect = 0.11
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKH-KKIAVNWSSYNPVKPIDTKDDLR----CDVCRIVGE 295
C +C+ F+S A HY G KH KK+ ++ N K + +KD + C + I G
Sbjct: 159 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITGN 218
Query: 296 STVQME 313
++ + E
Sbjct: 219 NSDKSE 224
Score = 31.6 bits (70), Expect = 2.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 92 EINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAVNWSSYNPVKP 244
+++++ ++ FC +C +S A H +GK H+K S P P
Sbjct: 23 QLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPPPP 73
>sp|P10583|GLNA_AZOBR Glutamine synthetase (Glutamate--ammonia ligase)
Length = 468
Score = 37.4 bits (85), Expect = 0.049
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +2
Query: 68 FRELVKKFEINEDVHRLDLEFCRICESPFSS----KVAALQHYSGKKHKKIAVNWSSYNP 235
F ++ K E+N+ + D E E P++S + L H G K Y P
Sbjct: 137 FDDVKFKVEMNKVSYEFDSE-----EGPYTSDKDYEDGNLGHRPGVK--------GGYFP 183
Query: 236 VKPIDTKDDLRCDVCRIVGESTVQMETHY---AGKKHQLKMK 352
V P+D+ DLR ++ ++ E V +E H+ A +H+L +K
Sbjct: 184 VAPVDSGSDLRAEMLSVLAEMGVPVEKHHHEVAASQHELGIK 225
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533
Length = 492
Score = 37.0 bits (84), Expect = 0.064
Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 19/192 (9%)
Frame = +2
Query: 5 VSKSGEPNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQHY 184
+ + +P A TAP++ S E KK L +C +C+ +S H
Sbjct: 277 LKNTSKPAALPTAPSEPSVESEEEKAKK-----------LLYCSLCKVAVNSLSQLEAHN 325
Query: 185 SGKKHKKIAVNWSSYNPVKPID-------------------TKDDLRCDVCRIVGESTVQ 307
+G KHK + + P+K C++C + S +Q
Sbjct: 326 TGSKHKTMLEARNGAGPIKAYPRPGSKLKVQATQLNKGSGLQNKTFHCEICDVHVNSEIQ 385
Query: 308 METHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENIL 487
++ H + ++H+ +RV AG P + +N +R ++ + +N L
Sbjct: 386 LKQHISSRRHK-------DRV-AGKPTKPK----YSPYNKQQRSSSSLA--AKLALQNDL 431
Query: 488 PKNLTGSFLNQP 523
K ++ +FL P
Sbjct: 432 VKPISPAFLPSP 443
Score = 35.8 bits (81), Expect = 0.14
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +2
Query: 155 SSKVAALQHYSGKKHKKIAVNWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKK 334
SS V +++ + AV ++ P K + C++C++ S Q E HY G K
Sbjct: 107 SSPVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNICQLRFNSDSQAEAHYKGSK 166
Query: 335 HQLKMKA 355
H K+KA
Sbjct: 167 HAKKLKA 173
Score = 32.3 bits (72), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 269 CDVCRIVGESTVQMETHYAGKKHQLKMK 352
CDVC I S Q + HY GK H ++K
Sbjct: 15 CDVCNIQLHSAAQAQVHYNGKSHLKRVK 42
Score = 30.8 bits (68), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 131 CRICESPFSSKVAALQHYSGKKH-KKIAVNWSSYNPVKPIDTKD 259
C IC+ F+S A HY G KH KK+ S N K +D
Sbjct: 145 CNICQLRFNSDSQAEAHYKGSKHAKKLKAQESPKNKQKSAVAQD 188
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,618,138
Number of Sequences: 369166
Number of extensions: 2205300
Number of successful extensions: 6639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6574
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)