Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F12
(869 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 542 e-154
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 542 e-154
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 540 e-153
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 539 e-153
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 538 e-152
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 536 e-152
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 535 e-152
sp|P02554|TBB_PIG Tubulin beta chain 535 e-152
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 535 e-152
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 534 e-151
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 542 bits (1396), Expect = e-154
Identities = 262/289 (90%), Positives = 269/289 (93%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 542 bits (1396), Expect = e-154
Identities = 262/289 (90%), Positives = 269/289 (93%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 540 bits (1391), Expect = e-153
Identities = 261/289 (90%), Positives = 268/289 (92%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 539 bits (1389), Expect = e-153
Identities = 259/289 (89%), Positives = 269/289 (93%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYVPRA+LVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 538 bits (1385), Expect = e-152
Identities = 260/289 (89%), Positives = 268/289 (92%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPF QIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVP+LTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPDLTQQMFDAKNMM 300
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 536 bits (1381), Expect = e-152
Identities = 256/289 (88%), Positives = 269/289 (93%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRA+LVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVRAGPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD++RKEAESCDCLQ
Sbjct: 72 TMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M+T+SVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKL+ PTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLSNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL+VPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMM 300
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 535 bits (1378), Expect = e-152
Identities = 258/289 (89%), Positives = 267/289 (92%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YVPRAVLVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREE+PDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPG APLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGLAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 535 bits (1377), Expect = e-152
Identities = 257/289 (88%), Positives = 267/289 (92%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA G KYVPRA+LVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 535 bits (1377), Expect = e-152
Identities = 258/289 (89%), Positives = 268/289 (92%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDP+GTYHGD++LQLERINVYYNEATGGKYVPRAVLVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPSGTYHGDNELQLERINVYYNEATGGKYVPRAVLVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+G FGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQ
Sbjct: 72 TMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FDAKNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 534 bits (1376), Expect = e-151
Identities = 256/289 (88%), Positives = 268/289 (92%)
Frame = +3
Query: 3 CGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPG 182
CGNQIG+KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEATG KYVPRA+LVDLEPG
Sbjct: 12 CGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPG 71
Query: 183 TMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQ 362
TMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQ
Sbjct: 72 TMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ 131
Query: 363 GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSVHQ 542
GFQ KIREEYPDR+M TFSV+PSPKVSDTVVEPYNATLSVHQ
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQ 191
Query: 543 LVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 722
LVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR
Sbjct: 192 LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLR 251
Query: 723 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQIFDAKNMM 869
KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ+FD+KNMM
Sbjct: 252 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,049,430
Number of Sequences: 369166
Number of extensions: 1812266
Number of successful extensions: 5249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4687
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)