Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F05
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RAL... 135 4e-32
sp|Q63639|AL1A2_RAT Retinal dehydrogenase 2 (RalDH2) (RALDH... 135 4e-32
sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial... 132 2e-31
sp|O94788|AL1A2_HUMAN Retinal dehydrogenase 2 (RalDH2) (RAL... 132 2e-31
sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial... 132 2e-31
sp|P12762|ALDH2_HORSE Aldehyde dehydrogenase, mitochondrial... 132 2e-31
sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial p... 132 2e-31
sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial... 132 3e-31
sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 (RalDH1) (RAL... 131 4e-31
sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial... 130 9e-31
>sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 135 bits (339), Expect = 4e-32
Identities = 62/98 (63%), Positives = 79/98 (80%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PVQ + +F TM+EVIERANNSD+GL A VFT+DINKA+M++ A++AG+VW+NCY+
Sbjct: 402 PVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQ 461
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGGFK SG GRE+G +GL Y EVK VT+ IPQKNS
Sbjct: 462 SPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKNS 499
>sp|Q63639|AL1A2_RAT Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 135 bits (339), Expect = 4e-32
Identities = 62/98 (63%), Positives = 79/98 (80%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PVQ + +F TM+EVIERANNSD+GL A VFT+DINKA+M++ A++AG+VW+NCY+
Sbjct: 402 PVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQ 461
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGGFK SG GRE+G +GL Y EVK VT+ IPQKNS
Sbjct: 462 SPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKNS 499
>sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 517
Score = 132 bits (333), Expect = 2e-31
Identities = 62/98 (63%), Positives = 76/98 (77%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PV + KF T+EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VWVNCYDV
Sbjct: 420 PVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQ 479
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGG+K SG GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 480 SPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS 517
>sp|O94788|AL1A2_HUMAN Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 132 bits (333), Expect = 2e-31
Identities = 61/98 (62%), Positives = 78/98 (79%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PVQ + +F TM+EVIERANNSD+GL A VFT+DINKA+ ++ A++AG+VW+NCY+
Sbjct: 402 PVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQ 461
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGGFK SG GRE+G +GL Y EVK VT+ IPQKNS
Sbjct: 462 SPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKNS 499
>sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDH1)
(ALDH-E2)
Length = 500
Score = 132 bits (333), Expect = 2e-31
Identities = 62/98 (63%), Positives = 76/98 (77%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PV + KF T+EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VW+NCYDV
Sbjct: 403 PVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQ 462
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGG+K SG GRELG YGL+ Y EVK VTI +PQKNS
Sbjct: 463 SPFGGYKMSGSGRELGEYGLQAYTEVKTVTIKVPQKNS 500
>sp|P12762|ALDH2_HORSE Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDHI)
(ALDH-E2)
Length = 500
Score = 132 bits (332), Expect = 2e-31
Identities = 62/98 (63%), Positives = 76/98 (77%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PV + KF T+EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VW+NCYDV
Sbjct: 403 PVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQ 462
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGG+K SG GRELG YGL+ Y EVK VTI +PQKNS
Sbjct: 463 SPFGGYKMSGNGRELGEYGLQAYTEVKTVTIKVPQKNS 500
>sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDH1) (ALDH-E2)
Length = 519
Score = 132 bits (332), Expect = 2e-31
Identities = 61/98 (62%), Positives = 76/98 (77%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PV + KF T+EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VW+NCYDV
Sbjct: 422 PVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQ 481
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGG+K SG GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 482 SPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS 519
>sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 520
Score = 132 bits (331), Expect = 3e-31
Identities = 62/98 (63%), Positives = 76/98 (77%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PV + KF +MEEV+ RANNS YGL A VFT D++KA ++QAL+AG+VWVNCYDV
Sbjct: 423 PVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQ 482
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGG+K SG GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 483 SPFGGYKLSGSGRELGEYGLQAYTEVKTVTVRVPQKNS 520
>sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 (RalDH1) (RALDH 1) (Aldehyde dehydrogenase
family 1 member A1) (Aldehyde dehydrogenase, cytosolic)
(ALHDII) (ALDH-E1)
Length = 509
Score = 131 bits (330), Expect = 4e-31
Identities = 63/98 (64%), Positives = 73/98 (74%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PVQ + KF T++EVI+RANN+ YGL A VFT DI+KA+ AL+AG+VWVNCY
Sbjct: 412 PVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQ 471
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
PFGGFK SG GRELG YGL+ Y EVK VTI IPQKNS
Sbjct: 472 CPFGGFKMSGNGRELGEYGLQEYTEVKTVTIKIPQKNS 509
>sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(AHD-M1) (ALDHI) (ALDH-E2)
Length = 519
Score = 130 bits (327), Expect = 9e-31
Identities = 60/98 (61%), Positives = 76/98 (77%)
Frame = +2
Query: 2 PVQSVFKFNTMEEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVT 181
PV + KF T+EEV+ RAN+S YGL A VFT D++KA ++QAL+AG+VW+NCYDV
Sbjct: 422 PVMQILKFKTIEEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQ 481
Query: 182 APFGGFKQSGVGRELGCYGLEPYIEVKGVTIAIPQKNS 295
+PFGG+K SG GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 482 SPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS 519
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,106,410
Number of Sequences: 369166
Number of extensions: 600955
Number of successful extensions: 1457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)