Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F01
(737 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CTE6|LGT_STAES Prolipoprotein diacylglyceryl transferase 32 1.4
sp|Q5HQW7|LGT_STAEQ Prolipoprotein diacylglyceryl transferase 32 1.8
>sp|Q8CTE6|LGT_STAES Prolipoprotein diacylglyceryl transferase
Length = 279
Score = 32.3 bits (72), Expect = 1.4
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3
Query: 666 SMNIKTTTRTTIERMIKRLSVVVIIATIMFSIDRRIKYSLYKYE 535
+M + T+ R+ + +SVV+I+ +++F I RR+KY KYE
Sbjct: 223 AMRTDSLMLTSHIRVAQLVSVVLILISVIFVIYRRVKYQPIKYE 266
>sp|Q5HQW7|LGT_STAEQ Prolipoprotein diacylglyceryl transferase
Length = 279
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3
Query: 666 SMNIKTTTRTTIERMIKRLSVVVIIATIMFSIDRRIKYSLYKYE 535
+M + T+ R+ + +SVV+I+ +++F I RR+KY KYE
Sbjct: 223 AMRTDSLMLTSHIRVAQLVSVVLIMISVIFVIYRRVKYQPIKYE 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,435,488
Number of Sequences: 369166
Number of extensions: 1319930
Number of successful extensions: 3659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3653
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)