Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E10
(358 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q507P6|MATK_RANGL Maturase K (Intron maturase) 33 0.20
sp|P43597|YFI6_YEAST Hypothetical 137.7 kDa protein in UGS1... 30 1.3
sp|Q10287|BGS1_SCHPO 1,3-beta-glucan synthase component bgs... 28 6.5
sp|Q79ZV2|ICAC_STAAW Biofilm PIA synthesis protein icaC (In... 28 8.4
sp|Q931E4|ICAC_STAAM Biofilm PIA synthesis protein icaC (In... 28 8.4
>sp|Q507P6|MATK_RANGL Maturase K (Intron maturase)
Length = 508
Score = 33.1 bits (74), Expect = 0.20
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -3
Query: 275 LHLTTLTIFEYYSLDLKEKVTEKESQN*LFFYEIGWNHRYYSFYFCYYIWFYRMIGK*L* 96
LHL ++EY++ + T+K QN LFF E N R++ F + ++++ I L
Sbjct: 176 LHLLRFFLYEYHNWN--SLTTQKTKQNPLFFKE---NRRFFLFLYNFHVYESESIFLFLR 230
Query: 95 QQNYF*NWISHI----RNHYY 45
+++Y S I R H+Y
Sbjct: 231 KKSYHLRSTSSIAFLDRTHFY 251
>sp|P43597|YFI6_YEAST Hypothetical 137.7 kDa protein in UGS1-FAB1 intergenic region
Length = 1233
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 230 NQGNNIQKSSESSNGDAFSELKSAQSVPALSTVIEKK 340
NQ +N+Q S +S GD++S L + +P+ + +IE +
Sbjct: 9 NQEHNVQPPSVTSAGDSYSTLATDLPLPSTNDIIESR 45
>sp|Q10287|BGS1_SCHPO 1,3-beta-glucan synthase component bgs1 (1,3-beta-D-glucan-UDP
glucosyltransferase)
Length = 1729
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = -3
Query: 179 EIGWNHRYYSFYFCYYIWFYRMIGK*L*QQNYF*NWISHIRNHYY 45
++ W +Y Y+ Y WF+ + N+ W+ HI ++Y
Sbjct: 313 DVEWKSCFYKSYYEYRSWFHNV-------TNFSRIWVMHISAYWY 350
>sp|Q79ZV2|ICAC_STAAW Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
sp|Q9RQP6|ICAC_STAAU Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
sp|Q6G605|ICAC_STAAS Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
sp|Q7A348|ICAC_STAAN Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
Length = 350
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -2
Query: 108 KITLATELLLELDFSYSESLLHDSYSFNVYF 16
K L +L+ L +SYSESLL DS SFN F
Sbjct: 82 KYILIPYILMGLFYSYSESLLTDS-SFNKQF 111
>sp|Q931E4|ICAC_STAAM Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
Length = 350
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -2
Query: 108 KITLATELLLELDFSYSESLLHDSYSFNVYF 16
K L +L+ L +SYSESLL DS SFN F
Sbjct: 82 KYILIPYILMGLFYSYSESLLTDS-SFNKQF 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,954,171
Number of Sequences: 369166
Number of extensions: 549020
Number of successful extensions: 1332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)