Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E07
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZIJ9|MIB2_CHICK Ubiquitin ligase protein MIB2 (Mind bo... 38 0.007
sp|Q02989|LITA_LATMA Alpha-latroinsectotoxin precursor (Alp... 37 0.021
sp|Q04861|NFKB1_CHICK Nuclear factor NF-kappa-B p105 subuni... 36 0.028
sp|P19838|NFKB1_HUMAN Nuclear factor NF-kappa-B p105 subuni... 35 0.080
sp|P25799|NFKB1_MOUSE Nuclear factor NF-kappa-B p105 subuni... 34 0.14
sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit ... 34 0.14
sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Min... 33 0.18
sp|Q68LP1|MIB2_RAT Ubiquitin ligase protein MIB2 (Mind bomb... 33 0.18
sp|Q05823|RN5A_HUMAN 2-5A-dependent ribonuclease (2-5A-depe... 33 0.23
sp|Q8R516|MIB2_MOUSE Ubiquitin ligase protein MIB2 (Mind bo... 33 0.23
>sp|Q5ZIJ9|MIB2_CHICK Ubiquitin ligase protein MIB2 (Mind bomb homolog 2)
Length = 954
Score = 38.1 bits (87), Expect = 0.007
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
+N++N ++PL+LA+I ++ L+ + V E D N D +GDT +
Sbjct: 659 VNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDTAM 703
>sp|Q02989|LITA_LATMA Alpha-latroinsectotoxin precursor (Alpha-LIT)
Length = 1411
Score = 36.6 bits (83), Expect = 0.021
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 174 SYINMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
S +N++NI E P YLA+ + + D FV + + N D NG+T+L
Sbjct: 861 SLMNVKNIRNEYPFYLAVEKRYKDIFDYFVSKDANVNEVDHNGNTLL 907
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 174 SYINMRNISGESPLYLALITKNLSLIDVFV-IEYVDFN 284
+Y+N + +G +PL+ A +T NL ++D + +Y++ N
Sbjct: 659 AYLNDGDANGMTPLHYAAMTGNLEMVDFLLNQQYININ 696
Score = 27.7 bits (60), Expect = 9.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
IN+++ G +PL+LA + NLS+ + + N D NG T L
Sbjct: 628 INIKSKVGLTPLHLATLQNNLSVSKLLAGKGAYLNDGDANGMTPL 672
>sp|Q04861|NFKB1_CHICK Nuclear factor NF-kappa-B p105 subunit [Contains: Nuclear factor
NF-kappa-B p50 subunit]
Length = 984
Score = 36.2 bits (82), Expect = 0.028
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
INMRN ++PL+LA+ITK +++ + + NL D +G++VL
Sbjct: 573 INMRNDLYQTPLHLAVITKQAEVVEDLLKAGANVNLLDRHGNSVL 617
>sp|P19838|NFKB1_HUMAN Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1)
(EBP-1) [Contains: Nuclear factor NF-kappa-B p50
subunit]
Length = 968
Score = 34.7 bits (78), Expect = 0.080
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 171 ESYINMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
+ INMRN ++PL+LA+ITK +++ + D +L D G++VL
Sbjct: 572 DDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVL 619
>sp|P25799|NFKB1_MOUSE Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1)
(EBP-1) (NF-kappa-B1 p84/NF-kappa-B1 p98) [Contains:
Nuclear factor NF-kappa-B p50 subunit]
Length = 971
Score = 33.9 bits (76), Expect = 0.14
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 171 ESYINMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
+ INMRN ++PL+LA+ITK +++ + D +L D G++VL
Sbjct: 568 DDIINMRNDLYQTPLHLAVITKQEDVVEDLLRVGADLSLLDRWGNSVL 615
>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1)
(EBP-1) [Contains: Nuclear factor NF-kappa-B p50
subunit]
Length = 522
Score = 33.9 bits (76), Expect = 0.14
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 171 ESYINMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
+ INMRN ++PL+LA+ITK +++ + D +L D G++VL
Sbjct: 119 DDIINMRNDLYQTPLHLAVITKQEDVVEDLLRVGADLSLLDRWGNSVL 166
>sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Mind bomb homolog) (D-mib)
Length = 1226
Score = 33.5 bits (75), Expect = 0.18
Identities = 13/45 (28%), Positives = 31/45 (68%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
++ +N++ ++ L+LA+ +++ ++ + V + D N+PD +GDT L
Sbjct: 763 MDRQNVNLQTALHLAVERQHVQIVKLLVQDGADLNIPDKDGDTPL 807
>sp|Q68LP1|MIB2_RAT Ubiquitin ligase protein MIB2 (Mind bomb homolog 2)
(RBSC-skeletrophin/dystrophin-like polypeptide)
Length = 971
Score = 33.5 bits (75), Expect = 0.18
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
+N+RN +SPL+LA+ +L L+ + V + N D GDT L
Sbjct: 675 VNVRNRKLQSPLHLAVQQAHLGLVPLLVDAGCNVNTEDEEGDTAL 719
>sp|Q05823|RN5A_HUMAN 2-5A-dependent ribonuclease (2-5A-dependent RNase) (Ribonuclease L)
(RNase L) (Ribonuclease 4)
Length = 741
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLID-VFVIEYVDFNLPDTNGDTVLCTLFKTFTNATDIP 356
+N+R G++PL LA+ K+L L+ + E+++ N D++G T L +
Sbjct: 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL-------- 283
Query: 357 YLEKTAKIMINGGAS 401
L+K A+++ GAS
Sbjct: 284 KLKKIAELLCKRGAS 298
>sp|Q8R516|MIB2_MOUSE Ubiquitin ligase protein MIB2 (Mind bomb homolog 2) (Mind bomb-2)
(Skeletrophin) (Dystrophin-like protein) (Dyslike)
Length = 973
Score = 33.1 bits (74), Expect = 0.23
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 180 INMRNISGESPLYLALITKNLSLIDVFVIEYVDFNLPDTNGDTVL 314
+N+RN +SPL+LA+ +L L+ + V N D GDT L
Sbjct: 677 VNVRNRKLQSPLHLAVQQAHLGLVPLLVDAGCSVNTEDEEGDTAL 721
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,055,596
Number of Sequences: 369166
Number of extensions: 722434
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)