Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D23
(146 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P99026|PSB4_MOUSE Proteasome subunit beta type 4 precurs... 49 4e-06
sp|P34067|PSB4_RAT Proteasome subunit beta type 4 precursor... 49 4e-06
sp|P28070|PSB4_HUMAN Proteasome subunit beta type 4 precurs... 48 6e-06
sp|P28024|PSB4_XENLA Proteasome subunit beta type 4 precurs... 45 7e-05
sp|Q9VNA5|PSB4_DROME Probable proteasome subunit beta type 4 33 0.15
sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type 4 precurs... 32 0.45
sp|Q9USQ9|PSB4_SCHPO Probable proteasome subunit beta type 4 28 4.9
>sp|P99026|PSB4_MOUSE Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3)
Length = 264
Score = 48.9 bits (115), Expect = 4e-06
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 3 YLRDCRASRKYQMAIINKDGVRVTGPHYLKTNWDVAHRVVGYE 131
Y RD R+ ++Q+A + + GV + GP +TNWD+AH + G+E
Sbjct: 222 YYRDARSYNRFQIATVTEKGVEIEGPLSAQTNWDIAHMISGFE 264
>sp|P34067|PSB4_RAT Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3) (RN3)
Length = 263
Score = 48.9 bits (115), Expect = 4e-06
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 3 YLRDCRASRKYQMAIINKDGVRVTGPHYLKTNWDVAHRVVGYE 131
Y RD R+ ++Q+A + + GV + GP +TNWD+AH + G+E
Sbjct: 221 YYRDARSYNRFQVATVTEKGVEIEGPLSAQTNWDIAHMISGFE 263
>sp|P28070|PSB4_HUMAN Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3) (HSN3)
(HsBPROS26)
Length = 264
Score = 48.1 bits (113), Expect = 6e-06
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 3 YLRDCRASRKYQMAIINKDGVRVTGPHYLKTNWDVAHRVVGYE 131
Y RD R+ ++Q A + + GV + GP +TNWD+AH + G+E
Sbjct: 222 YYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMISGFE 264
>sp|P28024|PSB4_XENLA Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3)
Length = 242
Score = 44.7 bits (104), Expect = 7e-05
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 3 YLRDCRASRKYQMAIINKDGVRVTGPHYLKTNWDVAHRVVGYE 131
Y RD R+ ++++ + + GV V GP +TNW++AH + G+E
Sbjct: 200 YYRDARSYNRFEITTVTESGVEVEGPLSSETNWEIAHLISGFE 242
>sp|Q9VNA5|PSB4_DROME Probable proteasome subunit beta type 4
Length = 268
Score = 33.5 bits (75), Expect = 0.15
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 3 YLRDCRASRKYQMAIINKDGVRVTGPHYLKTNWDVAHRVVGY 128
Y RD R +Y + + + +G V GP + NW A + GY
Sbjct: 227 YYRDTRNISQYTVGVCSVNGCGVEGPFQVNENWTFAETIKGY 268
>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type 4 precursor (Proteasome subunit beta
type 7) (20S proteasome beta subunit G-1) (Proteasome
component H)
Length = 246
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 9 RDCRASRKYQMAIINKDGVRVTGPHYLKTNWD 104
RD A K Q+A I ++GV V+ P+ LKT W+
Sbjct: 200 RDRSAINKLQIAKITEEGVTVSQPYSLKTYWE 231
>sp|Q9USQ9|PSB4_SCHPO Probable proteasome subunit beta type 4
Length = 262
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 3 YLRDCRASRKYQMAIINKDGVRVTGPHYLKTNWDVAHRVVGY 128
+ RD R+ K+ +A I +G+ + + W A + GY
Sbjct: 216 FYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFAEKQYGY 257
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,180,033
Number of Sequences: 369166
Number of extensions: 215663
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1671561060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)