Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D19-1
(164 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42566|EP15_HUMAN Epidermal growth factor receptor subst... 30 2.3
sp|Q9CXE7|TMED5_MOUSE Transmembrane emp24 domain containing... 29 3.9
sp|Q9Y3A6|TMED5_HUMAN Transmembrane emp24 domain containing... 29 3.9
sp|Q5R809|TMED5_PONPY Transmembrane emp24 domain containing... 29 3.9
sp|Q6AXN3|TMED5_RAT Transmembrane emp24 domain containing p... 29 3.9
>sp|P42566|EP15_HUMAN Epidermal growth factor receptor substrate 15 (Protein Eps15)
(AF-1p protein)
Length = 896
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 125 EHLQEKQRAIEAIDRSIMERN*LNTRHENHNSYLN 21
+HLQ+ Q+ I ++ +ME L ENHNS LN
Sbjct: 480 QHLQDSQQEISSMQMKLMEMKDL----ENHNSQLN 510
>sp|Q9CXE7|TMED5_MOUSE Transmembrane emp24 domain containing protein 5 precursor
Length = 229
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 161 SLTNIYTALNQMEHLQEKQRAIEAIDRSIMERN 63
S+ +I + L++ H+Q RA EA DR+I E N
Sbjct: 159 SINSIKSRLSKSGHIQTLLRAFEARDRNIQESN 191
>sp|Q9Y3A6|TMED5_HUMAN Transmembrane emp24 domain containing protein 5 precursor
Length = 229
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 161 SLTNIYTALNQMEHLQEKQRAIEAIDRSIMERN 63
S+ +I + L++ H+Q RA EA DR+I E N
Sbjct: 159 SINSIKSRLSKSGHIQTLLRAFEARDRNIQESN 191
>sp|Q5R809|TMED5_PONPY Transmembrane emp24 domain containing protein 5 precursor
Length = 229
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 161 SLTNIYTALNQMEHLQEKQRAIEAIDRSIMERN 63
S+ +I + L++ H+Q RA EA DR+I E N
Sbjct: 159 SINSIKSRLSKSGHIQTLLRAFEARDRNIQESN 191
>sp|Q6AXN3|TMED5_RAT Transmembrane emp24 domain containing protein 5 precursor
Length = 229
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 161 SLTNIYTALNQMEHLQEKQRAIEAIDRSIMERN 63
S+ +I + L++ H+Q RA EA DR+I E N
Sbjct: 159 SINSIKSRLSKSGHIQTLLRAFEARDRNIQESN 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,960,917
Number of Sequences: 369166
Number of extensions: 242722
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)