Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D18
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53471|ACT2_SCHMA Actin-2 402 e-112
sp|P68556|ACT1_DIPDE Actin-1/4 >gi|55976640|sp|P68555|ACT_T... 401 e-112
sp|P53456|ACT2_DIPDE Actin-2 401 e-112
sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin) 400 e-111
sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin) >gi|... 400 e-111
sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin) >gi... 400 e-111
sp|P63256|ACTG_ANSAN Actin, cytoplasmic 2 (Gamma-actin) 400 e-111
sp|P53505|ACT5_XENLA Actin, cytoplasmic type 5 400 e-111
sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 (Beta-actin) 400 e-111
sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5 399 e-111
>sp|P53471|ACT2_SCHMA Actin-2
Length = 376
Score = 402 bits (1033), Expect = e-112
Identities = 199/203 (98%), Positives = 203/203 (100%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 174 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 233
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMESAG+HETTFNSIMKCDVDIRKD
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRKD 293
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TM+PGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 353
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGPGIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPGIVHRKCF 376
>sp|P68556|ACT1_DIPDE Actin-1/4
sp|P68555|ACT_TAESO Actin
Length = 376
Score = 401 bits (1031), Expect = e-112
Identities = 199/203 (98%), Positives = 203/203 (100%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 174 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 233
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHE+TFN+IMKCDVDIRKD
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHESTFNAIMKCDVDIRKD 293
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEIT+LAPSTMKIKIVAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 353
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGPGIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPGIVHRKCF 376
>sp|P53456|ACT2_DIPDE Actin-2
Length = 376
Score = 401 bits (1031), Expect = e-112
Identities = 199/203 (98%), Positives = 203/203 (100%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 174 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 233
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHE+TFN+IMKCDVDIRKD
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHESTFNAIMKCDVDIRKD 293
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEIT+LAPSTMKIKIVAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 353
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGPGIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPGIVHRKCF 376
>sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 400 bits (1027), Expect = e-111
Identities = 198/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 232
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 292
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin)
sp|P60713|ACTB_SHEEP Actin, cytoplasmic 1 (Beta-actin)
sp|Q5R1X3|ACTB_PANTR Actin, cytoplasmic 1 (Beta-actin)
sp|P60710|ACTB_MOUSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q711N9|ACTB_MESAU Actin, cytoplasmic 1 (Beta-actin)
sp|P60708|ACTB_HORSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q76N69|ACTB_CERAE Actin, cytoplasmic 1 (Beta-actin)
sp|Q71FK5|ACTB_CAVPO Actin, cytoplasmic 1 (Beta-actin)
sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 (Beta-actin)
sp|P60711|ACTB_RAT Actin, cytoplasmic 1 (Beta-actin)
sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin)
sp|P60706|ACTB_CHICK Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 400 bits (1027), Expect = e-111
Identities = 198/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 232
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 292
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin)
sp|P63259|ACTG_RAT Actin, cytoplasmic 2 (Gamma-actin)
sp|P63257|ACTG_TRIVU Actin, cytoplasmic 2 (Gamma-actin)
sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 (Gamma-actin)
sp|P63258|ACTG_BOVIN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 400 bits (1027), Expect = e-111
Identities = 198/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 232
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 292
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>sp|P63256|ACTG_ANSAN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 400 bits (1027), Expect = e-111
Identities = 198/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 232
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 292
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>sp|P53505|ACT5_XENLA Actin, cytoplasmic type 5
Length = 376
Score = 400 bits (1027), Expect = e-111
Identities = 198/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 174 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 233
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 293
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
>sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 400 bits (1027), Expect = e-111
Identities = 198/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 173 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 232
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 233 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 292
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5
Length = 376
Score = 399 bits (1025), Expect = e-111
Identities = 197/203 (97%), Positives = 201/203 (99%)
Frame = +3
Query: 3 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 182
HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS
Sbjct: 174 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 233
Query: 183 SSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKD 362
SSSLEKSYELPDGQVITIGNERFRCPE++FQPSFLGMES GIHETTFNSIMKCDVDIRKD
Sbjct: 234 SSSLEKSYELPDGQVITIGNERFRCPEAIFQPSFLGMESCGIHETTFNSIMKCDVDIRKD 293
Query: 363 LYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTF 542
LYANTVLSGG+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 543 QQMWISKQEYDESGPGIVHRKCF 611
QQMWISKQEYDESGP IVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,276,314
Number of Sequences: 369166
Number of extensions: 1723943
Number of successful extensions: 4685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4550
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)