Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D16
(816 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00518|PHKG1_RABIT Phosphorylase b kinase gamma catalyti... 319 7e-87
sp|Q16816|PHKG1_HUMAN Phosphorylase b kinase gamma catalyti... 314 2e-85
sp|Q9DB30|PHKG2_MOUSE Phosphorylase b kinase gamma catalyti... 313 4e-85
sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamma catalyti... 313 5e-85
sp|P31325|PHKG2_RAT Phosphorylase b kinase gamma catalytic ... 312 6e-85
sp|P07934|PHKG1_MOUSE Phosphorylase b kinase gamma catalyti... 312 8e-85
sp|P13286|PHKG1_RAT Phosphorylase b kinase gamma catalytic ... 312 8e-85
sp|Q5RCC4|KCC2A_PONPY Calcium/calmodulin-dependent protein ... 215 1e-55
sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein ki... 215 1e-55
sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein ... 215 1e-55
>sp|P00518|PHKG1_RABIT Phosphorylase b kinase gamma catalytic chain, skeletal muscle
isoform (Phosphorylase kinase gamma subunit 1)
Length = 387
Score = 319 bits (817), Expect = 7e-87
Identities = 158/273 (57%), Positives = 189/273 (69%), Gaps = 4/273 (1%)
Frame = +2
Query: 8 FYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSG----VDSPTILRAECHREV 175
FY YEPKEI+G G SS VRRCI + T EYAVKIIDV G + LR +EV
Sbjct: 16 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEV 75
Query: 176 EILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQIF 355
+ILR V+G PNII+L D YE+ + FL+F+L KGELFD+L +VTLSEK TR IM +
Sbjct: 76 DILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALL 135
Query: 356 EAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAPEA 535
E + +H NIVHRDLKPENILLDD+ NIK+TDFG + + D E+L+E+ GTP YLAPE
Sbjct: 136 EVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEI 195
Query: 536 LAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPEWD 715
+ NDN P YG+ VD+W+ GVIMYTLL G PPFWHRKQ LMLR IM Y F SPEWD
Sbjct: 196 IECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWD 255
Query: 716 DISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
D S KDL+ + L+V P +R A EAL H FF
Sbjct: 256 DYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFF 288
>sp|Q16816|PHKG1_HUMAN Phosphorylase b kinase gamma catalytic chain, skeletal muscle
isoform (Phosphorylase kinase gamma subunit 1)
Length = 387
Score = 314 bits (805), Expect = 2e-85
Identities = 154/275 (56%), Positives = 188/275 (68%), Gaps = 4/275 (1%)
Frame = +2
Query: 2 EHFYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSG----VDSPTILRAECHR 169
+ FY YEPKEI+G G SS VRRCI + T EYAVK+IDV G + LR +
Sbjct: 14 QDFYENYEPKEILGRGVSSVVRRCIHKPTSQEYAVKVIDVTGGGSFSPEEVRELREATLK 73
Query: 170 EVEILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQ 349
EV+ILR V+G PNII+L D YE+ + FL+F+L +GELFD+L +VTLSEK TR IM
Sbjct: 74 EVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKRGELFDYLTEKVTLSEKETRKIMRA 133
Query: 350 IFEAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAP 529
+ E + +H NIVHRDLKPENILLDDN NIK+TDFG + + + E L+E+ GTP YLAP
Sbjct: 134 LLEVICTLHKLNIVHRDLKPENILLDDNMNIKLTDFGFSCQLEPGERLREVCGTPSYLAP 193
Query: 530 EALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPE 709
E + N++ P YG+ VD+W+ GVIMYTLL G PPFWHRKQ LMLR IM Y F SPE
Sbjct: 194 EIIECSMNEDHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPE 253
Query: 710 WDDISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
WDD S KDL+ + L+V P R A EAL H FF
Sbjct: 254 WDDYSDTVKDLVSRFLVVQPQNRYTAEEALAHPFF 288
>sp|Q9DB30|PHKG2_MOUSE Phosphorylase b kinase gamma catalytic chain, testis/liver isoform
(PHK-gamma-T) (Phosphorylase kinase gamma subunit 2)
Length = 406
Score = 313 bits (802), Expect = 4e-85
Identities = 154/274 (56%), Positives = 197/274 (71%), Gaps = 3/274 (1%)
Frame = +2
Query: 2 EHFYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNS---GVDSPTILRAECHRE 172
+ FY KY+PK+IIG G SS VRRC+ R T E+AVKI++V++ ++ +R RE
Sbjct: 18 KEFYQKYDPKDIIGRGVSSVVRRCVHRATGDEFAVKIMEVSAERLSLEQLEEVRDATRRE 77
Query: 173 VEILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQI 352
+ ILR VAG P+II L D YES +MFL+F+L KGELFD+L +V LSEK TR IM +
Sbjct: 78 MHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSL 137
Query: 353 FEAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAPE 532
EAV+F+H+ NIVHRDLKPENILLDDN I+++DFG + + E+L+E+ GTPGYLAPE
Sbjct: 138 LEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEAGEKLRELCGTPGYLAPE 197
Query: 533 ALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPEW 712
L ++ P YG+ VD+WACGVI++TLL G PPFWHR+Q LMLR IME +Y F SPEW
Sbjct: 198 ILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFTSPEW 257
Query: 713 DDISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
DD S KDLI K+L V+P R+ A +AL H FF
Sbjct: 258 DDCSNTVKDLISKLLQVDPEARLTAEQALQHPFF 291
>sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamma catalytic chain, testis/liver isoform
(PHK-gamma-T) (Phosphorylase kinase gamma subunit 2)
(PSK-C3)
Length = 406
Score = 313 bits (801), Expect = 5e-85
Identities = 155/274 (56%), Positives = 195/274 (71%), Gaps = 3/274 (1%)
Frame = +2
Query: 2 EHFYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSGVDSPTIL---RAECHRE 172
+ FY KY+PK++IG G SS VRRC+ R T E+AVKI++V + SP L R RE
Sbjct: 18 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRE 77
Query: 173 VEILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQI 352
ILR VAG P+II L D YES +MFL+F+L KGELFD+L +V LSEK TR IM +
Sbjct: 78 THILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSL 137
Query: 353 FEAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAPE 532
EAV+F+H+ NIVHRDLKPENILLDDN I+++DFG + + E+L+E+ GTPGYLAPE
Sbjct: 138 LEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPE 197
Query: 533 ALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPEW 712
L ++ P YG+ VD+WACGVI++TLL G PPFWHR+Q LMLR IME +Y F SPEW
Sbjct: 198 ILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEW 257
Query: 713 DDISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
DD S KDLI ++L V+P R+ A +AL H FF
Sbjct: 258 DDRSSTVKDLISRLLQVDPEARLTAEQALQHPFF 291
>sp|P31325|PHKG2_RAT Phosphorylase b kinase gamma catalytic chain, testis/liver isoform
(PHK-gamma-T) (Phosphorylase kinase gamma subunit 2)
Length = 406
Score = 312 bits (800), Expect = 6e-85
Identities = 155/274 (56%), Positives = 196/274 (71%), Gaps = 3/274 (1%)
Frame = +2
Query: 2 EHFYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNS---GVDSPTILRAECHRE 172
+ FY KY+PK+IIG G SS VRRC+ R T E+AVKI++V++ ++ +R RE
Sbjct: 18 KEFYQKYDPKDIIGRGVSSVVRRCVHRATGDEFAVKIMEVSAERLSLEQLEEVRDATRRE 77
Query: 173 VEILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQI 352
+ ILR VAG P+II L D YES +MFL+F+L KGELFD+L +V LSEK TR IM +
Sbjct: 78 MHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSL 137
Query: 353 FEAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAPE 532
EAV F+H NIVHRDLKPENILLDDN I+++DFG + + E+L+E+ GTPGYLAPE
Sbjct: 138 LEAVNFLHVNNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPE 197
Query: 533 ALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPEW 712
L ++ P YG+ VD+WACGVI++TLL G PPFWHR+Q LMLR IME +Y F SPEW
Sbjct: 198 ILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEW 257
Query: 713 DDISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
DD S KDLI K+L V+PN R+ A +AL H FF
Sbjct: 258 DDRSNTVKDLIAKLLQVDPNARLTAEQALQHPFF 291
>sp|P07934|PHKG1_MOUSE Phosphorylase b kinase gamma catalytic chain, skeletal muscle
isoform (Phosphorylase kinase gamma subunit 1)
Length = 388
Score = 312 bits (799), Expect = 8e-85
Identities = 153/273 (56%), Positives = 188/273 (68%), Gaps = 4/273 (1%)
Frame = +2
Query: 8 FYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSG----VDSPTILRAECHREV 175
FY YEPKEI+G G SS VRRCI + T EYAVKIID+ G + LR +EV
Sbjct: 16 FYENYEPKEILGRGVSSVVRRCIHKPTCQEYAVKIIDITGGGSFSSEEVQELREATLKEV 75
Query: 176 EILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQIF 355
+IL+ V+G PNII+L D YE+ + FL+F+L +GELFD+L +VTL+EK TR IM +
Sbjct: 76 DILQKVSGHPNIIQLKDTYETNTFFFLVFDLMKRGELFDYLTEKVTLTEKETRKIMRALL 135
Query: 356 EAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAPEA 535
E + +H NIVHRDLKPENILLDDN NIK+TDFG + + E+L+E+ GTP YLAPE
Sbjct: 136 EVICTLHKLNIVHRDLKPENILLDDNMNIKLTDFGFSCQLQPGEKLREVCGTPSYLAPEI 195
Query: 536 LAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPEWD 715
+ +D P YG+ VD+W+ GVIMYTLL G PPFWHRKQ LMLR IM+ KY F SPEWD
Sbjct: 196 IQCSMDDGHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMDGKYQFGSPEWD 255
Query: 716 DISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
D S KDL+ + L+V P R A EAL H FF
Sbjct: 256 DYSDTVKDLVSRFLVVQPQDRCSAEEALAHPFF 288
>sp|P13286|PHKG1_RAT Phosphorylase b kinase gamma catalytic chain, skeletal muscle
isoform (Phosphorylase kinase gamma subunit 1)
Length = 388
Score = 312 bits (799), Expect = 8e-85
Identities = 153/275 (55%), Positives = 190/275 (69%), Gaps = 4/275 (1%)
Frame = +2
Query: 2 EHFYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSG----VDSPTILRAECHR 169
++FY YEPKEI+G G SS VRRCI + T EYAVKIID+ G + LR +
Sbjct: 14 QNFYENYEPKEILGRGVSSVVRRCIHKPTCQEYAVKIIDITGGGSFSSEEVQELREATLK 73
Query: 170 EVEILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQ 349
EV+IL+ V+G PNII+L D YE+ + FL+F+L +GELFD+L +VTL+EK TR IM
Sbjct: 74 EVDILQKVSGHPNIIQLKDTYETNTFFFLVFDLMKRGELFDYLTEKVTLTEKETRKIMRA 133
Query: 350 IFEAVAFIHSKNIVHRDLKPENILLDDNFNIKITDFGLAVKTDNIEELKEIRGTPGYLAP 529
+ E V +H NIVHRDLKPENILLDDN NIK+TDFG + + E+L+E+ GTP YLAP
Sbjct: 134 LLEVVCTLHKLNIVHRDLKPENILLDDNMNIKLTDFGFSCQLQPGEKLREVCGTPSYLAP 193
Query: 530 EALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHSPE 709
E + ++ P YG+ VD+W+ GVIMYTLL G PPFWHRKQ LMLR IM+ KY F SPE
Sbjct: 194 EIIQCSMDEGHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMDGKYQFGSPE 253
Query: 710 WDDISQAPKDLIKKILIVNPNQRIKASEALYHEFF 814
WDD S KDL+ + L+V P R A EAL H FF
Sbjct: 254 WDDYSDTVKDLVSRFLVVQPQDRCSAEEALAHPFF 288
>sp|Q5RCC4|KCC2A_PONPY Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 215 bits (547), Expect = 1e-55
Identities = 123/274 (44%), Positives = 159/274 (58%), Gaps = 8/274 (2%)
Frame = +2
Query: 8 FYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSGVDSPTILRAECH----REV 175
F +Y+ E +G GA S VRRC+ EYA KII+ L A H RE
Sbjct: 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKK-------LSARDHQKLEREA 61
Query: 176 EILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQIF 355
I RL+ PNI+ LHD E + +LIF+L GELF+ + AR SE + QI
Sbjct: 62 RICRLLK-HPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQIL 120
Query: 356 EAVAFIHSKNIVHRDLKPENILLDDNFN---IKITDFGLAVKTDNIEELK-EIRGTPGYL 523
EAV H +VHRDLKPEN+LL +K+ DFGLA++ + ++ GTPGYL
Sbjct: 121 EAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYL 180
Query: 524 APEALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHS 703
+PE L + PYG+PVD+WACGVI+Y LLVG PPFW QH + +QI Y F S
Sbjct: 181 SPEVL------RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPS 234
Query: 704 PEWDDISQAPKDLIKKILIVNPNQRIKASEALYH 805
PEWD ++ KDLI K+L +NP++RI A+EAL H
Sbjct: 235 PEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268
>sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 215 bits (547), Expect = 1e-55
Identities = 123/274 (44%), Positives = 159/274 (58%), Gaps = 8/274 (2%)
Frame = +2
Query: 8 FYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSGVDSPTILRAECH----REV 175
F +Y+ E +G GA S VRRC+ EYA KII+ L A H RE
Sbjct: 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKK-------LSARDHQKLEREA 61
Query: 176 EILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQIF 355
I RL+ PNI+ LHD E + +LIF+L GELF+ + AR SE + QI
Sbjct: 62 RICRLLK-HPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQIL 120
Query: 356 EAVAFIHSKNIVHRDLKPENILLDDNFN---IKITDFGLAVKTDNIEELK-EIRGTPGYL 523
EAV H +VHRDLKPEN+LL +K+ DFGLA++ + ++ GTPGYL
Sbjct: 121 EAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYL 180
Query: 524 APEALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHS 703
+PE L + PYG+PVD+WACGVI+Y LLVG PPFW QH + +QI Y F S
Sbjct: 181 SPEVL------RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPS 234
Query: 704 PEWDDISQAPKDLIKKILIVNPNQRIKASEALYH 805
PEWD ++ KDLI K+L +NP++RI A+EAL H
Sbjct: 235 PEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268
>sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 215 bits (547), Expect = 1e-55
Identities = 123/274 (44%), Positives = 159/274 (58%), Gaps = 8/274 (2%)
Frame = +2
Query: 8 FYSKYEPKEIIGTGASSTVRRCIDRKTKVEYAVKIIDVNSGVDSPTILRAECH----REV 175
F +Y+ E +G GA S VRRC+ EYA KII+ L A H RE
Sbjct: 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKK-------LSARDHQKLEREA 61
Query: 176 EILRLVAGQPNIIELHDFYESEVYMFLIFELCPKGELFDHLNARVTLSEKRTRIIMSQIF 355
I RL+ PNI+ LHD E + +LIF+L GELF+ + AR SE + QI
Sbjct: 62 RICRLLK-HPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQIL 120
Query: 356 EAVAFIHSKNIVHRDLKPENILLDDNFN---IKITDFGLAVKTDNIEELK-EIRGTPGYL 523
EAV H +VHRDLKPEN+LL +K+ DFGLA++ + ++ GTPGYL
Sbjct: 121 EAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYL 180
Query: 524 APEALAVGYNDNQPPYGQPVDVWACGVIMYTLLVGCPPFWHRKQHLMLRQIMECKYSFHS 703
+PE L + PYG+PVD+WACGVI+Y LLVG PPFW QH + +QI Y F S
Sbjct: 181 SPEVL------RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPS 234
Query: 704 PEWDDISQAPKDLIKKILIVNPNQRIKASEALYH 805
PEWD ++ KDLI K+L +NP++RI A+EAL H
Sbjct: 235 PEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,511,525
Number of Sequences: 369166
Number of extensions: 1682023
Number of successful extensions: 8872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6411
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)