Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D03
(853 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02094|RHAG_HUMAN Rhesus blood group-associated glycopro... 265 2e-70
sp|Q28446|RHL_HYLPI RH-like protein (Rhesus-like protein) 154 2e-37
sp|Q28849|RHL_MACMU RH-like protein (Rhesus-like protein) 148 2e-35
sp|Q28481|RHL_MACFA RH-like protein (Rhesus-like protein) 148 2e-35
sp|Q28426|RHLC_GORGO RH-like protein IC (Rhesus-like protei... 140 4e-33
sp|Q28427|RHLD_GORGO RH-like protein ID (Rhesus-like protei... 133 5e-31
sp|Q28814|RHLR_PANTR RH-like protein IIR (Rhesus-like prote... 132 9e-31
sp|Q28813|RHLA_PANTR RH-like protein IA (Rhesus-like protei... 132 9e-31
sp|Q28812|RHLF_PANTR RH-like protein IIF (Rhesus-like prote... 132 2e-30
sp|Q02161|RHD_HUMAN Blood group Rh(D) polypeptide (Rhesus D... 129 1e-29
>sp|Q02094|RHAG_HUMAN Rhesus blood group-associated glycoprotein (Rhesus blood
group-associated ammonia channel) (Erythrocyte plasma
membrane 50 kDa glycoprotein) (Rh50A)
Length = 409
Score = 265 bits (676), Expect = 2e-70
Identities = 136/285 (47%), Positives = 194/285 (68%), Gaps = 5/285 (1%)
Frame = +3
Query: 12 FVITAAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDT--LSNVYPYFQDVQGMIF 185
F + A VL+ + +L +F +YE D V N + D +YP FQDV MIF
Sbjct: 5 FPLMAIVLEIAMIVLFGLFVEYET--DQTVLEQLNITKPTDMGIFFELYPLFQDVHVMIF 62
Query: 186 LGFGFLMTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHATRIYLDGTSLLNAEFAT 365
+GFGFLMTFLKKYG+SSVGIN +AA+ +QW ++ G L S + + +++NA+F+
Sbjct: 63 VGFGFLMTFLKKYGFSSVGINLLVAALGLQWGTIVQGILQSQGQKFNIGIKNMINADFSA 122
Query: 366 ATILISFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFG 545
AT+LISFG VLGKT+P QMLIM+ +E+ F NEY+ + K SD+G S+ +H FGAYFG
Sbjct: 123 ATVLISFGAVLGKTSPTQMLIMTILEIVFFAHNEYLVSEIFKASDIGASMTIHAFGAYFG 182
Query: 546 MFLSRVIYKPKMGKS-KNEGAYYHSDVFSMIGTLILWIFWPSFNSGGID-GDQRHRAVVN 719
+ ++ ++Y+ + K +NE + Y+SD+F+MIGTL LW+FWPSFNS + GD++ RA+V+
Sbjct: 183 LAVAGILYRSGLRKGHENEESAYYSDLFAMIGTLFLWMFWPSFNSAIAEPGDKQCRAIVD 242
Query: 720 TFCALLGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGASA 851
T+ +L + F S+LVE +GK+NMVH+ NATL+GGVAVG A
Sbjct: 243 TYFSLAACVLTAFAFSSLVEHRGKLNMVHIQNATLAGGVAVGTCA 287
>sp|Q28446|RHL_HYLPI RH-like protein (Rhesus-like protein)
Length = 354
Score = 154 bits (390), Expect = 2e-37
Identities = 96/279 (34%), Positives = 150/279 (53%), Gaps = 4/279 (1%)
Frame = +3
Query: 24 AAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFGFL 203
A L+A + +L F+ Y+ ++ Q L Y QD+ M LG GFL
Sbjct: 17 ALTLEAALILLFFFFTHYDASLED-----------QKGLVATYQVGQDLTVMAALGLGFL 65
Query: 204 MTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATILI 380
+ L+++ +SSV N F+ A+ +QWA++L+GFL+ ++ + S+ A + + LI
Sbjct: 66 TSNLRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVIKLLSIRLATMSAMSSLI 125
Query: 381 SFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFLSR 560
S G VLGK +Q+++M +E+ F + ++ K + + +H F AYFG+ ++
Sbjct: 126 SVGAVLGKVNLVQLVVMVLVELTAFGTMRMVINNIFKTDYHVNIMHIHVFAAYFGLTVAW 185
Query: 561 VIYK-PKMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTFCAL 734
+ K P G E + +M+G L LWIFWPSFNS + +R AV NT+ AL
Sbjct: 186 CLPKPPPEGTEDKEQIANSPSLSAMLGALFLWIFWPSFNSALLTNPIERKNAVFNTYYAL 245
Query: 735 LGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
ST+ VS+L +GKINM ++ NA L+GGVAVG S
Sbjct: 246 AVSTVTAISVSSLAHPQGKINMTYMHNAVLAGGVAVGTS 284
>sp|Q28849|RHL_MACMU RH-like protein (Rhesus-like protein)
Length = 417
Score = 148 bits (374), Expect = 2e-35
Identities = 91/279 (32%), Positives = 152/279 (54%), Gaps = 4/279 (1%)
Frame = +3
Query: 24 AAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFGFL 203
A L+A + +L F+ Y+ ++ Q L Y QD+ M LG GF
Sbjct: 17 ALTLEAALILLFFFFTYYDASLED-----------QKGLVASYQVCQDLTVMAVLGLGFF 65
Query: 204 MTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATILI 380
+ L++ +SSV N F+ A+ +QWA++L+GFL+ + ++ + S+ A +T ++LI
Sbjct: 66 TSNLRRNSWSSVAFNLFLLALGVQWAILLDGFLSQFSPGKVAIKLFSIRLATRSTMSMLI 125
Query: 381 SFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFLSR 560
S VLGK +Q+++M +E+ +F + ++ K+ + + +H F AYFG+ ++
Sbjct: 126 SMNAVLGKVNLVQLVVMELVELTVFGTMRIVINNIFKIDYGMNMMHIHVFAAYFGLTVAW 185
Query: 561 VIYKP-KMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSG-GIDGDQRHRAVVNTFCAL 734
+ KP G +F+M+GTL LW+FWP+FNS ++ +R AV +T+ AL
Sbjct: 186 CLPKPLPKGTEDKYQTTTSPSLFAMLGTLFLWMFWPTFNSALLLNPIERKNAVFSTYYAL 245
Query: 735 LGSTILTFIVSALVEK-GKINMVHVANATLSGGVAVGAS 848
S + VS+L GKINM ++ NA L+GGVA+ AS
Sbjct: 246 AVSAVTAISVSSLAHPGGKINMTYMHNAALAGGVALSAS 284
>sp|Q28481|RHL_MACFA RH-like protein (Rhesus-like protein)
Length = 417
Score = 148 bits (374), Expect = 2e-35
Identities = 92/279 (32%), Positives = 152/279 (54%), Gaps = 4/279 (1%)
Frame = +3
Query: 24 AAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFGFL 203
A L+A + +L F+ Y+ ++ Q L Y QD+ M LG GF
Sbjct: 17 ALTLEAALILLFFFFTYYDASLED-----------QKGLVASYQVCQDLTVMAVLGLGFF 65
Query: 204 MTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATILI 380
+ L++ +SSV N F+ A+ +QWA++L+GFL+ + ++ + S+ A +T ++LI
Sbjct: 66 TSNLRRNSWSSVAFNLFLLALGVQWAILLDGFLSQFSPGKVVIKLFSIRLATRSTTSMLI 125
Query: 381 SFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFLSR 560
S VLGK Q+++M +E+ +F + ++ K+ + + +H F AYFG+ ++
Sbjct: 126 SMNAVLGKVNLAQLVVMELVELTVFGTMRIVIYNIFKIDYGMNMMHIHVFAAYFGLTVAW 185
Query: 561 VIYKP-KMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSG-GIDGDQRHRAVVNTFCAL 734
+ KP G +F+M+GTL LW+FWP+FNS ++ +R AV +T+ AL
Sbjct: 186 CLPKPLPKGTEDKYQTTTSPSLFAMLGTLFLWMFWPTFNSALLLNPIERKNAVFSTYYAL 245
Query: 735 LGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
S + VS+L + KINM ++ NA L+GGVAVGAS
Sbjct: 246 AVSAVTAISVSSLAHPQRKINMTYMPNAGLAGGVAVGAS 284
>sp|Q28426|RHLC_GORGO RH-like protein IC (Rhesus-like protein IC)
Length = 417
Score = 140 bits (353), Expect = 4e-33
Identities = 91/282 (32%), Positives = 152/282 (53%), Gaps = 5/282 (1%)
Frame = +3
Query: 18 ITAAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFG 197
+ A L+A + +L F+ Y+ ++ Q L Y QD+ M +GFG
Sbjct: 15 LCALTLEAALILLFYFFTHYDASLED-----------QKGLVASYQVGQDLTVMAAIGFG 63
Query: 198 FLMTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATI 374
FL + +++ +SSV N F+ A+ +QWA++L+GFL+ ++ + S+ A + ++
Sbjct: 64 FLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSALSV 123
Query: 375 LISFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFL 554
LIS G VLG +Q+++M +E+ + ++ + + F AYFG+ +
Sbjct: 124 LISAGAVLGYVNLVQLVVMVLVEVTALGTMRMVISNIFNTDYHMNMTHFYVFAAYFGVTV 183
Query: 555 SRVIYK--PKMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTF 725
+ + K P + + K++ A S + +M+GTL LW+FWPSFNS + +R AV NT+
Sbjct: 184 AWCLPKPLPDIKEDKDQIATIPS-LSAMLGTLFLWMFWPSFNSALLRSPIERKNAVFNTY 242
Query: 726 CALLGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
AL S + VS+L +GKINM ++ NA L+GGVAVG S
Sbjct: 243 YALAVSVVTAISVSSLAHPQGKINMTYMHNAVLAGGVAVGTS 284
>sp|Q28427|RHLD_GORGO RH-like protein ID (Rhesus-like protein ID)
Length = 417
Score = 133 bits (335), Expect = 5e-31
Identities = 88/282 (31%), Positives = 150/282 (53%), Gaps = 5/282 (1%)
Frame = +3
Query: 18 ITAAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFG 197
+ A L+A + +L F+ Y+ ++ Q L Y QD+ M +GFG
Sbjct: 15 LCALTLEAALTLLFYFFTHYDASLED-----------QKGLVASYQVGQDLTVMAAIGFG 63
Query: 198 FLMTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATI 374
FL + + + +SSV N F+ A+ +QWA++L+GFL+ ++ + S+ A + ++
Sbjct: 64 FLTSSFRGHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSALSV 123
Query: 375 LISFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFL 554
LIS G VLG +Q+++M +E+ + ++ + + ++ F A FG+ +
Sbjct: 124 LISAGAVLGYVNLVQLVVMVLVEVTALGTMRMVISNIFNTDYHMNMMHIYVFAACFGLSV 183
Query: 555 SRVIYKP--KMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTF 725
+ + KP K + K++ A S + +M+G L LW+FWPSFNS + +R AV NT+
Sbjct: 184 AWCLPKPLAKGTEDKDQTATIPS-LSAMLGALFLWMFWPSFNSALLRSPIERKNAVFNTY 242
Query: 726 CALLGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
A+ S + VS+L +GKINM ++ NA L+GGVAV S
Sbjct: 243 YAVAVSVVTAISVSSLAHPQGKINMTYMHNAVLAGGVAVATS 284
>sp|Q28814|RHLR_PANTR RH-like protein IIR (Rhesus-like protein IIR)
Length = 417
Score = 132 bits (333), Expect = 9e-31
Identities = 87/282 (30%), Positives = 152/282 (53%), Gaps = 5/282 (1%)
Frame = +3
Query: 18 ITAAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFG 197
+ A L+A + +L F+ Y+ ++ Q L Y QD+ M +GFG
Sbjct: 15 LCALTLEAALILLFYFFTQYDASLED-----------QKGLVASYQVGQDLTVMAAIGFG 63
Query: 198 FLMTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATI 374
FL + +++ +SSV + F+ A+ +QWA++L+GFL+ ++ + S+ A + ++
Sbjct: 64 FLTSSFRRHSWSSVAFSLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATTSALSV 123
Query: 375 LISFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFL 554
LIS VLGK +Q+++M +E+ + ++ + + ++ F AYFG+ +
Sbjct: 124 LISVDAVLGKVNLVQLVVMVLVEVTALGTVRMVISNIFNTDYHMNLMHIYVFAAYFGLSV 183
Query: 555 SRVIYK--PKMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTF 725
+ + K PK + K++ A S + +M+G L LW+FWPSFNS + +R AV NT+
Sbjct: 184 AWCLPKPLPKGTEDKDQIATIPS-LSAMLGALFLWMFWPSFNSALLRSPIERKNAVFNTY 242
Query: 726 CALLGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
A+ S + S+L +GKI+M ++ NA L+GGVAVG S
Sbjct: 243 YAVAVSVVTAISGSSLAHPQGKISMSYMHNAVLAGGVAVGTS 284
>sp|Q28813|RHLA_PANTR RH-like protein IA (Rhesus-like protein IA)
Length = 417
Score = 132 bits (333), Expect = 9e-31
Identities = 87/282 (30%), Positives = 152/282 (53%), Gaps = 5/282 (1%)
Frame = +3
Query: 18 ITAAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFG 197
+ A L+A + +L F+ Y+ ++ Q L Y QD+ M +GFG
Sbjct: 15 LCALTLEAALILLFYFFTQYDASLED-----------QKGLVASYQVGQDLTVMAAIGFG 63
Query: 198 FLMTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATI 374
FL + +++ +SSV + F+ A+ +QWA++L+GFL+ ++ + S+ A + ++
Sbjct: 64 FLTSSFRRHSWSSVAFSLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATTSALSV 123
Query: 375 LISFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFL 554
LIS VLGK +Q+++M +E+ + ++ + + ++ F AYFG+ +
Sbjct: 124 LISVDAVLGKVNLVQLVVMVLVEVTALGTVRMVISNIFNTDYHMNLMHIYVFAAYFGLSV 183
Query: 555 SRVIYK--PKMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTF 725
+ + K PK + K++ A S + +M+G L LW+FWPSFNS + +R AV NT+
Sbjct: 184 AWCLPKPLPKGTEDKDQIATIPS-LSAMLGALFLWMFWPSFNSALLRSPIERKNAVFNTY 242
Query: 726 CALLGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
A+ S + S+L +GKI+M ++ NA L+GGVAVG S
Sbjct: 243 YAVAVSVVTAISGSSLAHPQGKISMSYMHNAVLAGGVAVGTS 284
>sp|Q28812|RHLF_PANTR RH-like protein IIF (Rhesus-like protein IIF)
Length = 417
Score = 132 bits (331), Expect = 2e-30
Identities = 88/282 (31%), Positives = 151/282 (53%), Gaps = 5/282 (1%)
Frame = +3
Query: 18 ITAAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFG 197
+ A L+A + +L F+ Y+ ++ Q L Y QD+ M +GFG
Sbjct: 15 LCALTLEAALILLFYFFTHYDASLED-----------QKGLVASYQVGQDLTVMAAIGFG 63
Query: 198 FLMTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATI 374
FL + +++ +SSV N F+ A+ +QWA++L+GFL+ ++ + S+ A + ++
Sbjct: 64 FLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATTSALSV 123
Query: 375 LISFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFL 554
LIS G VLG +Q+++M +E+ + ++ + + + F AYFG+ +
Sbjct: 124 LISAGAVLGYVNLVQLVVMVLVEVTALGTMRMVISNIFNTDYHMNMMHFYLFTAYFGVTV 183
Query: 555 SRVIYK--PKMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTF 725
+ + K P + + K++ A S + +M+G L LW+FWPSFNS + +R AV NT+
Sbjct: 184 AWCLPKPLPDVKEDKDQIATIPS-LSAMLGALFLWMFWPSFNSALLRSPIERKNAVFNTY 242
Query: 726 CALLGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
AL S + S+L +GKI+M +V +A L+GGVAVG S
Sbjct: 243 YALAVSVVTAISGSSLAHPQGKISMTYVHSAVLAGGVAVGTS 284
>sp|Q02161|RHD_HUMAN Blood group Rh(D) polypeptide (Rhesus D antigen) (RHXIII) (Rh
polypeptide 2) (RhPII)
Length = 417
Score = 129 bits (323), Expect = 1e-29
Identities = 83/279 (29%), Positives = 144/279 (51%), Gaps = 4/279 (1%)
Frame = +3
Query: 24 AAVLQAFVFILLAIFSDYEPRIDAGVTGSANNSVLQDTLSNVYPYFQDVQGMIFLGFGFL 203
A L+A + +L F+ Y+ ++ Q L Y QD+ M +G GFL
Sbjct: 17 ALTLEAALILLFYFFTHYDASLED-----------QKGLVASYQVGQDLTVMAAIGLGFL 65
Query: 204 MTFLKKYGYSSVGINFFIAAISIQWALVLNGFLNSHAT-RIYLDGTSLLNAEFATATILI 380
+ +++ +SSV N F+ A+ +QWA++L+GFL+ + ++ + S+ A + ++LI
Sbjct: 66 TSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSALSVLI 125
Query: 381 SFGVVLGKTTPLQMLIMSFIEMPIFVLNEYIGRHLLKVSDVGDSIFVHTFGAYFGMFLSR 560
S VLGK Q+++M +E+ + ++ + + ++ F AYFG+ ++
Sbjct: 126 SVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNTDYHMNMMHIYVFAAYFGLSVAW 185
Query: 561 VIYKP-KMGKSKNEGAYYHSDVFSMIGTLILWIFWPSFNSGGIDGD-QRHRAVVNTFCAL 734
+ KP G + + +M+G L LW+FWPSFNS + +R AV NT+ A+
Sbjct: 186 CLPKPLPEGTEDKDQTATIPSLSAMLGALFLWMFWPSFNSALLRSPIERKNAVFNTYYAV 245
Query: 735 LGSTILTFIVSALVE-KGKINMVHVANATLSGGVAVGAS 848
S + S+L +GKI+ +V +A L+GGVAVG S
Sbjct: 246 AVSVVTAISGSSLAHPQGKISKTYVHSAVLAGGVAVGTS 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,006,653
Number of Sequences: 369166
Number of extensions: 1974317
Number of successful extensions: 5362
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5326
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)