Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_C20
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18648|APOA1_PIG Apolipoprotein A-I precursor (Apo-AI) (... 36 0.088
sp|P21607|VE06_VACCV Protein E6 32 1.3
sp|Q08358|PP220_ASFB7 Polyprotein pp220 (220 kDa polyprotei... 32 1.3
sp|P21047|VE06_VACCC Protein E6 32 1.3
sp|P33819|VE06_VARV Protein E6 32 1.7
sp|Q59QH6|SPC19_CANAL DASH complex subunit SPC19 (Outer kin... 31 2.8
sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase cata... 31 2.8
sp|Q6L1G8|AROB_PICTO 3-dehydroquinate synthase 30 3.7
sp|P49092|ASNS1_LOTJA Asparagine synthetase [glutamine-hydr... 30 4.8
sp|P49078|ASNS_ARATH Asparagine synthetase [glutamine-hydro... 30 4.8
>sp|P18648|APOA1_PIG Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
Length = 265
Score = 35.8 bits (81), Expect = 0.088
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 120 VSNFSNAIKSSVQVSDKKFGVMNNFDDNIVKSSESATRRLFTD-EEIRLLVQIFKDYFEN 296
+ N+ + + +V ++ V F DN+ K +E+ + + D EE++ VQ + D F+N
Sbjct: 70 LDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQN 129
Query: 297 NLTPGLAEVRKKISQTVLETNRGANSVRSKIKRLQ 401
+ R+K++ E GA R K++ LQ
Sbjct: 130 KWQEEMETYRQKMAPLGAEFREGA---RQKVQELQ 161
>sp|P21607|VE06_VACCV Protein E6
Length = 567
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Frame = +3
Query: 201 NIVKSSESATRRLFTDEEIRLLVQIFKDYFENN-----LTPGLAEVRK---------KIS 338
N + + + R F ++ R++VQI +YF+N + A++++ IS
Sbjct: 326 NFINGNTFISDRTFNEDLFRVVVQIDPEYFDNERIMSLFSTSAADIKRFDELDINNSYIS 385
Query: 339 QTVLETNRGANSVRSKIKRLQIDNQWTSY 425
+ E N +K+ QI N+ TSY
Sbjct: 386 NIIYEVNDITLDTMDDMKKCQIFNEDTSY 414
>sp|Q08358|PP220_ASFB7 Polyprotein pp220 (220 kDa polyprotein) [Contains: p34; p14; p37;
p150]
Length = 2475
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +3
Query: 60 INNIWETESTSYAPSAPDSSVSNFSNAIKSS----VQVSDKKFGVMNNFDDNIVKSSESA 227
I + E T +AP+ V N I++ + + + ++ NF DNI+ ++
Sbjct: 190 IKQLHERMVTEVTKAAPNEEVINAVTMIEAVYRRLLNEQNLQINILTNFIDNILTPTQKE 249
Query: 228 TRRLFTDEEIRLLVQIFKDYFENNLTPGLAEVRKKISQTVLETNRGANSVRSKIKR 395
+L TDE V I K + N G K +S T+ A SV +KI +
Sbjct: 250 LDKLQTDE-----VDIIKLLNDTNSVLGTKNFGKVLSYTLCNLGIAA-SVANKINK 299
>sp|P21047|VE06_VACCC Protein E6
Length = 567
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Frame = +3
Query: 201 NIVKSSESATRRLFTDEEIRLLVQIFKDYFENN-----LTPGLAEVRK---------KIS 338
N + + + R F ++ R++VQI +YF+N + A++++ IS
Sbjct: 326 NFINGNTFISDRTFNEDLFRVVVQIDPEYFDNERIMSLFSTSAADIKRFDELDINNSYIS 385
Query: 339 QTVLETNRGANSVRSKIKRLQIDNQWTSY 425
+ E N +K+ QI N+ TSY
Sbjct: 386 NIIYEVNDITLDTMDDMKKCQIFNEDTSY 414
>sp|P33819|VE06_VARV Protein E6
Length = 567
Score = 31.6 bits (70), Expect = 1.7
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Frame = +3
Query: 201 NIVKSSESATRRLFTDEEIRLLVQIFKDYFENN-----LTPGLAEVRK---------KIS 338
N + + + R F ++ R++VQI +YF+N + E+++ IS
Sbjct: 326 NFINGNTFISDRTFNEDLFRVVVQIDPEYFDNERIMSLFSTSAVEIKRFDELDINNSYIS 385
Query: 339 QTVLETNRGANSVRSKIKRLQIDNQWTSY 425
+ E N +K+ QI N+ TSY
Sbjct: 386 NIIYEVNDITLDTMDDMKKCQIFNEDTSY 414
>sp|Q59QH6|SPC19_CANAL DASH complex subunit SPC19 (Outer kinetochore protein SPC19)
Length = 175
Score = 30.8 bits (68), Expect = 2.8
Identities = 18/101 (17%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Frame = +3
Query: 114 SSVSNFSNAIKSSVQVSDKKFGVMNNFDDNIVKSSESATRRLFTDEEIRLLVQI----FK 281
+++ N +++++ S+++ + N D ++ S T+ L T++ L+ ++ K
Sbjct: 13 NNLDNCTDSLRQSIKILQQS----NKILDETLQDSTRLTKILSTNKVFDLIPELDLNDAK 68
Query: 282 DYFENNLTPGLAEVRKKISQTVLETNRGANSVRSKIKRLQI 404
F N+TP L + K+ +++ ++ +K+K + +
Sbjct: 69 SNFTKNITPQLNQQLNKLEDELIQLQTKKTTLTNKLKLINV 109
>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplast
precursor (FTR-C) (Ferredoxin-thioredoxin reductase
subunit B) (FTR-B) (B2)
Length = 144
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 90 SYAPSAPDSSVSNFSNAIKSSVQVSDKKFGVMNNFDDNIVKSSES 224
S+ S+P +S FS I++ SDK VM F + + S++
Sbjct: 11 SFPISSPAASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDT 55
>sp|Q6L1G8|AROB_PICTO 3-dehydroquinate synthase
Length = 338
Score = 30.4 bits (67), Expect = 3.7
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 23/116 (19%)
Frame = +3
Query: 120 VSNFSNAIKSSVQVSDKKFGVMNNFDDNIVKSSE-----------SATRRLFTDEEIRLL 266
+ + ++K + + + F ++NN D I+++ E S + F D++
Sbjct: 164 MDGLAESLKMGITIEPELFNIINNDPDYIIENIERIITLSINAKLSIVSKDFHDKKHLRY 223
Query: 267 VQIF--------KDYFENNLTPGLAEVRKKISQTVLETNRG----ANSVRSKIKRL 398
V F + YF NN++ G A I + + G +N +RS IKRL
Sbjct: 224 VLNFGHTIGHALESYFNNNISHGEAVANGMIIEAYISKCLGNADISNEIRSIIKRL 279
>sp|P49092|ASNS1_LOTJA Asparagine synthetase [glutamine-hydrolyzing] 1
(Glutamine-dependent asparagine synthetase 1)
Length = 586
Score = 30.0 bits (66), Expect = 4.8
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 12 PPSANESDRMNRIQIWINNIWETESTSYAPSAPDSSVSNFSNAIKSSVQVSDKKFGVM-- 185
PP S R + W N W +ES AP P + F A+ + ++D FGV+
Sbjct: 175 PPGHLYSSRERAFRRWYNPTWFSESIPSAPYDPLAVRHAFEKAVIKRL-MTDVPFGVLLS 233
Query: 186 NNFDDNIVKSSES 224
D ++V S S
Sbjct: 234 GGLDSSLVASITS 246
>sp|P49078|ASNS_ARATH Asparagine synthetase [glutamine-hydrolyzing] (Glutamine-dependent
asparagine synthetase)
Length = 584
Score = 30.0 bits (66), Expect = 4.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 12 PPSANESDRMNRIQIWINNIWETESTSYAPSAPDSSVSNFSNAIKSSVQVSDKKFGVM-- 185
PP S ++ + W N W ES P P + F NA+ + ++D FGV+
Sbjct: 175 PPGHFYSSKLGGFKQWYNPPWFNESVPSTPYEPLAIRRAFENAVIKRL-MTDVPFGVLLS 233
Query: 186 NNFDDNIVKS 215
D ++V S
Sbjct: 234 GGLDSSLVAS 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,279,427
Number of Sequences: 369166
Number of extensions: 1116844
Number of successful extensions: 2965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2964
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)