Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_C07
(527 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12716|ACTC_PISOC Actin, cytoplasmic 293 2e-79
sp|P53470|ACT1_SCHMA Actin-1 291 5e-79
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 291 5e-79
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 291 7e-79
sp|P53465|ACT1_LYTPI Actin, cytoskeletal 1 (LPC1) 291 7e-79
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 290 1e-78
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 290 1e-78
sp|P53461|ACTC_HALRO Actin, nonmuscle 290 1e-78
sp|P53472|ACTA_STRPU Actin, cytoskeletal IA 290 1e-78
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 289 3e-78
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 293 bits (750), Expect = 2e-79
Identities = 142/148 (95%), Positives = 147/148 (99%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME+AGIHETTYNSIMKCDV
Sbjct: 229 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKE++ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEVTALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 291 bits (746), Expect = 5e-79
Identities = 142/147 (96%), Positives = 145/147 (98%)
Frame = +1
Query: 4 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDVD 183
TAASSS+LEKSYELPDGQVITIGNERFRCPEALFQPSFLGME +GIHETTYNSIMKCDVD
Sbjct: 230 TAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEASGIHETTYNSIMKCDVD 289
Query: 184 IRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILAS 363
IRKDLYSNTVLSGGSTMYPGIADRMQKEISALAP TMKIKI+APPERKYSVWIGGSILAS
Sbjct: 290 IRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILAS 349
Query: 364 LSTFQQMWISKQEYDESGPGIVHRKCF 444
LSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 350 LSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 291 bits (746), Expect = 5e-79
Identities = 142/148 (95%), Positives = 145/148 (97%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTA SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME AGIHETTYNSIMKCDV
Sbjct: 229 QTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI+ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 291 bits (745), Expect = 7e-79
Identities = 141/148 (95%), Positives = 146/148 (98%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTAASSSSLEKSYELPDGQVITIGNERFRCPE LFQPSF+GME+AGIHETTYNSIMKCDV
Sbjct: 229 QTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGG+TM+PGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53465|ACT1_LYTPI Actin, cytoskeletal 1 (LPC1)
Length = 376
Score = 291 bits (745), Expect = 7e-79
Identities = 142/148 (95%), Positives = 146/148 (98%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME+AGIHET YNSIMKCDV
Sbjct: 229 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETCYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI+ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 290 bits (742), Expect = 1e-78
Identities = 140/148 (94%), Positives = 146/148 (98%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTA++SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME AGIHETTYNSIMKCDV
Sbjct: 229 QTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI+ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 290 bits (742), Expect = 1e-78
Identities = 140/148 (94%), Positives = 146/148 (98%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTA++SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME AGIHETTYNSIMKCDV
Sbjct: 229 QTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI+ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53461|ACTC_HALRO Actin, nonmuscle
Length = 376
Score = 290 bits (742), Expect = 1e-78
Identities = 140/148 (94%), Positives = 146/148 (98%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTAA+SSS+EKSYELPDGQVIT+GNERFRCPEALFQPSFLGME+AGIHETTYNSIMKCDV
Sbjct: 229 QTAATSSSIEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEIVALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53472|ACTA_STRPU Actin, cytoskeletal IA
Length = 376
Score = 290 bits (742), Expect = 1e-78
Identities = 141/148 (95%), Positives = 146/148 (98%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP+FLGME+AGIHET YNSIMKCDV
Sbjct: 229 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMESAGIHETCYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI+ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 289 bits (740), Expect = 3e-78
Identities = 139/148 (93%), Positives = 147/148 (99%)
Frame = +1
Query: 1 QTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMETAGIHETTYNSIMKCDV 180
QTA++SSSLEKSYELPDGQVITIGNERFRCPEA++QPSFLGME+AGIHETTYNSIMKCDV
Sbjct: 229 QTASTSSSLEKSYELPDGQVITIGNERFRCPEAMYQPSFLGMESAGIHETTYNSIMKCDV 288
Query: 181 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 360
DIRKDLY+NTVLSGGSTM+PGIADRMQKEI+ALAPPTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 361 SLSTFQQMWISKQEYDESGPGIVHRKCF 444
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,595,886
Number of Sequences: 369166
Number of extensions: 1331502
Number of successful extensions: 3580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3494
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)