Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B14
(472 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 139 2e-33
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 116 3e-26
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 115 4e-26
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 115 5e-26
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 114 9e-26
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 107 2e-23
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 106 3e-23
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 90 3e-18
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 83 4e-16
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 70 2e-12
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 139 bits (351), Expect = 2e-33
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYER---RSDDRRGNQRSTECYNCHETGHMSRECP 182
C+ CG+ GH+SR+CP + +G RGGY + RS + G CY C + GH+SR+CP
Sbjct: 99 CYKCGQEGHLSRDCPSS--QGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP 156
Query: 183 KQRN--QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN--- 347
+ G+ + CYKCG+ GH++RDC G KCY C ++GHMSRECP+
Sbjct: 157 NGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGS 216
Query: 348 -GQSDKKCYKCNKVGHMSRDCNE*G 419
G D+ CYKC K GH+SR+C E G
Sbjct: 217 TGSGDRACYKCGKPGHISRECPEAG 241
Score = 130 bits (327), Expect = 2e-30
Identities = 71/179 (39%), Positives = 87/179 (48%), Gaps = 36/179 (20%)
Frame = +3
Query: 3 SGACFNCGESGHMSRECPQNDNRGD-------RRGGYERRSDD-----RRGNQRSTECYN 146
S CF CGE GHMSRECP G R G S D + G + ECY
Sbjct: 42 STTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYK 101
Query: 147 CHETGHMSRECPKQRNQGSR------------------NNGCYKCGENGHMARDCTQEGG 272
C + GH+SR+CP + GSR + CYKCG+ GH++RDC G
Sbjct: 102 CGQEGHLSRDCPSSQG-GSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQG 160
Query: 273 NDRQERQIKCYNCNQNGHMSRECPNGQS------DKKCYKCNKVGHMSRDCNE*GSIGT 431
CY C GH+SR+CPNGQ D+KCYKC + GHMSR+C GS G+
Sbjct: 161 GYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGS 219
Score = 128 bits (321), Expect = 7e-30
Identities = 61/157 (38%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Frame = +3
Query: 3 SGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECP 182
S +C NCG+ GH +RECP+ D++GD +RST C+ C E GHMSRECP
Sbjct: 15 STSCRNCGKEGHYARECPEADSKGD---------------ERSTTCFRCGEEGHMSRECP 59
Query: 183 KQRNQGSRN-NGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQ-- 353
+ G+ C++CGE GHM+RDC + +CY C Q GH+SR+CP+ Q
Sbjct: 60 NEARSGAAGAMTCFRCGEAGHMSRDC-PNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGG 118
Query: 354 -------------------SDKKCYKCNKVGHMSRDC 407
D+ CYKC GH+SRDC
Sbjct: 119 SRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 125 bits (315), Expect = 4e-29
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
C+ CG++GH+SR+CP +GGY D CY C + GH+SR+CP +
Sbjct: 142 CYKCGDAGHISRDCPNG------QGGYSGAGD--------RTCYKCGDAGHISRDCPNGQ 187
Query: 192 N--QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN------ 347
G+ + CYKCGE+GHM+R+C G +R CY C + GH+SRECP
Sbjct: 188 GGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYG 245
Query: 348 ---GQSDKKCYKCNKVGHMSRDC 407
G D+ CYKC + GH+SRDC
Sbjct: 246 GSRGGGDRTCYKCGEAGHISRDC 268
Score = 109 bits (272), Expect = 4e-24
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
C+ CG++GH+SR+CP +GGY D + CY C E+GHMSRECP
Sbjct: 170 CYKCGDAGHISRDCPNG------QGGYSGAGDRK--------CYKCGESGHMSRECPSAG 215
Query: 192 NQGSRNNGCYKCGENGHMARDCTQEGGN---DRQERQIKCYNCNQNGHMSRECPN 347
+ GS + CYKCG+ GH++R+C + GG+ R CY C + GH+SR+CP+
Sbjct: 216 STGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
Score = 99.8 bits (247), Expect = 3e-21
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Frame = +3
Query: 111 RRGNQRSTECYNCHETGHMSRECPKQRNQG-SRNNGCYKCGENGHMARDCTQEGGNDRQE 287
R + ST C NC + GH +RECP+ ++G R+ C++CGE GHM+R+C E
Sbjct: 9 RPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE-ARSGAA 67
Query: 288 RQIKCYNCNQNGHMSRECPNGQSDK-----KCYKCNKVGHMSRDC 407
+ C+ C + GHMSR+CPN +CYKC + GH+SRDC
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +3
Query: 165 MSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECP 344
MS +R + + C CG+ GH AR+C E + ER C+ C + GHMSRECP
Sbjct: 1 MSETEDVKRPRTESSTSCRNCGKEGHYARECP-EADSKGDERSTTCFRCGEEGHMSRECP 59
Query: 345 N-----GQSDKKCYKCNKVGHMSRDCNE*GSIGTAK 437
N C++C + GHMSRDC G AK
Sbjct: 60 NEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAK 95
Score = 56.6 bits (135), Expect = 3e-08
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 9 ACFNCGESGHMSRECPQ-NDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECP 182
AC+ CG+ GH+SRECP+ + G RGG +R CY C E GH+SR+CP
Sbjct: 223 ACYKCGKPGHISRECPEAGGSYGGSRGGGDR------------TCYKCGEAGHISRDCP 269
Score = 33.9 bits (76), Expect = 0.19
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQN 62
C+ CGE+GH+SR+CP +
Sbjct: 255 CYKCGEAGHISRDCPSS 271
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 116 bits (290), Expect = 3e-26
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
C+NCGE+GH+ EC C+NC++TGH+SRECP+ +
Sbjct: 49 CYNCGETGHVRSECTVQ------------------------RCFNCNQTGHISRECPEPK 84
Query: 192 NQGSRNN-GCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKC 368
+ CYKCG HMA+DC +E G +KCY C Q GHMSR+C Q+D+ C
Sbjct: 85 KTSRFSKVSCYKCGGPNHMAKDCMKEDGISG----LKCYTCGQAGHMSRDC---QNDRLC 137
Query: 369 YKCNKVGHMSRDC 407
Y CN+ GH+S+DC
Sbjct: 138 YNCNETGHISKDC 150
Score = 93.2 bits (230), Expect = 3e-19
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Frame = +3
Query: 9 ACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQ 188
AC+ CG+ GH++ +C D R CYNC++ GH+ +C
Sbjct: 5 ACYVCGKIGHLAEDC-----------------DSER------LCYNCNKPGHVQTDCTMP 41
Query: 189 RNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQ----- 353
R + CY CGE GH+ +CT + +C+NCNQ GH+SRECP +
Sbjct: 42 RTVEFKQ--CYNCGETGHVRSECTVQ----------RCFNCNQTGHISRECPEPKKTSRF 89
Query: 354 SDKKCYKCNKVGHMSRDC 407
S CYKC HM++DC
Sbjct: 90 SKVSCYKCGGPNHMAKDC 107
Score = 75.1 bits (183), Expect = 8e-14
Identities = 33/92 (35%), Positives = 50/92 (54%)
Frame = +3
Query: 138 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 317
CY C + GH++ +C +R CY C + GH+ DCT R +CYNC +
Sbjct: 6 CYVCGKIGHLAEDCDSERL-------CYNCNKPGHVQTDCTMP----RTVEFKQCYNCGE 54
Query: 318 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 413
GH+ EC + ++C+ CN+ GH+SR+C E
Sbjct: 55 TGHVRSEC----TVQRCFNCNQTGHISRECPE 82
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPK 185
C+ CG++GHMSR+C QND CYNC+ETGH+S++CPK
Sbjct: 118 CYTCGQAGHMSRDC-QNDRL----------------------CYNCNETGHISKDCPK 152
Score = 44.7 bits (104), Expect = 1e-04
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 291 QIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 407
Q CY C + GH++ +C S++ CY CNK GH+ DC
Sbjct: 3 QKACYVCGKIGHLAEDC---DSERLCYNCNKPGHVQTDC 38
Score = 32.3 bits (72), Expect = 0.56
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 354 SDKKCYKCNKVGHMSRDCN 410
S K CY C K+GH++ DC+
Sbjct: 2 SQKACYVCGKIGHLAEDCD 20
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 115 bits (289), Expect = 4e-26
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 9/146 (6%)
Frame = +3
Query: 3 SGACFNCGESGHMSRECPQNDNRG-----DRRGGYERRSDDRRGNQRSTE----CYNCHE 155
S CF CG SGH +RECP RG RGG+ + DR S+ CY C E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGF---TSDRGFQFVSSSLPDICYRCGE 59
Query: 156 TGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSR 335
+GH++++C Q ++ CY CG GH+A+DC + ++ER+ CYNC + GH++R
Sbjct: 60 SGHLAKDCDLQEDE-----ACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLAR 110
Query: 336 ECPNGQSDKKCYKCNKVGHMSRDCNE 413
+C + ++KCY C + GH+ +DC +
Sbjct: 111 DCDHA-DEQKCYSCGEFGHIQKDCTK 135
Score = 103 bits (257), Expect = 2e-22
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDR---RGGYERRSDDRRGNQRSTECYNCHETGHMSRECP 182
C+ CGESGH++++C ++ RGG+ + +R CYNC + GH++R+C
Sbjct: 54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 113
Query: 183 KQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDK 362
Q CY CGE GH+ +DCT+ +KCY C + GH++ C S+
Sbjct: 114 HADEQK-----CYSCGEFGHIQKDCTK----------VKCYRCGETGHVAINCSK-TSEV 157
Query: 363 KCYKCNKVGHMSRDC 407
CY+C + GH++R+C
Sbjct: 158 NCYRCGESGHLAREC 172
Score = 68.2 bits (165), Expect = 9e-12
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
Frame = +3
Query: 9 ACFNCGESGHMSRECPQNDNRGDR------RGGYERRSDDRRGNQRSTECYNCHETGHMS 170
AC+NCG GH++++C + ++ + G+ R D Q+ CY+C E GH+
Sbjct: 74 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK---CYSCGEFGHIQ 130
Query: 171 RECPKQRNQGSRNNG-------------CYKCGENGHMARDCTQE 266
++C K + G CY+CGE+GH+AR+CT E
Sbjct: 131 KDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 175
Score = 28.9 bits (63), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 354 SDKKCYKCNKVGHMSRDCNE*GSIG 428
S +C+KC + GH +R+C G G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRG 26
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 115 bits (288), Expect = 5e-26
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Frame = +3
Query: 3 SGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTE-----CYNCHETGHM 167
S CF CG +GH +RECP RG RG RS R G Q + CY C E+GH+
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRG--RG---MRSRGRAGFQFMSSSLPDICYRCGESGHL 57
Query: 168 SRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN 347
+++C Q ++ CY CG GH+A+DC + ++ER+ CYNC + GH++R+C +
Sbjct: 58 AKDCDLQEDK-----ACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLARDCDH 108
Query: 348 GQSDKKCYKCNKVGHMSRDCNE 413
++KCY C + GH+ +DC +
Sbjct: 109 A-DEQKCYSCGEFGHIQKDCTK 129
Score = 104 bits (259), Expect = 1e-22
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDR---RGGYERRSDDRRGNQRSTECYNCHETGHMSRECP 182
C+ CGESGH++++C +++ RGG+ + +R CYNC + GH++R+C
Sbjct: 48 CYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 107
Query: 183 KQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDK 362
Q CY CGE GH+ +DCT+ +KCY C + GH++ C S+
Sbjct: 108 HADEQK-----CYSCGEFGHIQKDCTK----------VKCYRCGETGHVAINCSK-TSEV 151
Query: 363 KCYKCNKVGHMSRDC 407
CY+C + GH++R+C
Sbjct: 152 NCYRCGESGHLAREC 166
Score = 68.2 bits (165), Expect = 9e-12
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
Frame = +3
Query: 9 ACFNCGESGHMSRECPQNDNRGDR------RGGYERRSDDRRGNQRSTECYNCHETGHMS 170
AC+NCG GH++++C + ++ + G+ R D Q+ CY+C E GH+
Sbjct: 68 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK---CYSCGEFGHIQ 124
Query: 171 RECPKQRNQGSRNNG-------------CYKCGENGHMARDCTQE 266
++C K + G CY+CGE+GH+AR+CT E
Sbjct: 125 KDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 169
Score = 28.9 bits (63), Expect = 6.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 354 SDKKCYKCNKVGHMSRDC 407
S +C+KC + GH +R+C
Sbjct: 2 SSNECFKCGRTGHWAREC 19
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 114 bits (286), Expect = 9e-26
Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Frame = +3
Query: 3 SGACFNCGESGHMSRECPQNDNRG-----DRRGGYERRSDDRRGNQRSTE----CYNCHE 155
S CF CG SGH +RECP RG RGG+ + DR S+ CY C E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGF---TSDRGFQFVSSSLPDICYRCGE 59
Query: 156 TGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSR 335
+GH++++C Q + CY CG GH+A+DC + ++ER+ CYNC + GH++R
Sbjct: 60 SGHLAKDCDLQ------EDACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLAR 109
Query: 336 ECPNGQSDKKCYKCNKVGHMSRDCNE 413
+C + ++KCY C + GH+ +DC +
Sbjct: 110 DCDHA-DEQKCYSCGEFGHIQKDCTK 134
Score = 103 bits (257), Expect = 2e-22
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNR--GDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPK 185
C+ CGESGH++++C ++ RGG+ + +R CYNC + GH++R+C
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 113
Query: 186 QRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK 365
Q CY CGE GH+ +DCT+ +KCY C + GH++ C S+
Sbjct: 114 ADEQK-----CYSCGEFGHIQKDCTK----------VKCYRCGETGHVAINCSK-TSEVN 157
Query: 366 CYKCNKVGHMSRDC 407
CY+C + GH++R+C
Sbjct: 158 CYRCGESGHLAREC 171
Score = 68.2 bits (165), Expect = 9e-12
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
Frame = +3
Query: 9 ACFNCGESGHMSRECPQNDNRGDR------RGGYERRSDDRRGNQRSTECYNCHETGHMS 170
AC+NCG GH++++C + ++ + G+ R D Q+ CY+C E GH+
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK---CYSCGEFGHIQ 129
Query: 171 RECPKQRNQGSRNNG-------------CYKCGENGHMARDCTQE 266
++C K + G CY+CGE+GH+AR+CT E
Sbjct: 130 KDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174
Score = 28.9 bits (63), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 354 SDKKCYKCNKVGHMSRDCNE*GSIG 428
S +C+KC + GH +R+C G G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRG 26
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 107 bits (266), Expect = 2e-23
Identities = 51/131 (38%), Positives = 73/131 (55%)
Frame = +3
Query: 15 FNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRN 194
F CG SGH +R CP+ G RRGG R S CY C E+G ++ C
Sbjct: 7 FACGHSGHWARGCPRG-GAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCV---- 61
Query: 195 QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYK 374
N CY CG +GH+A+DC + ++ER+ CY C + GH++R+C + Q ++KCY
Sbjct: 62 --LLGNICYNCGRSGHIAKDCK----DPKRERRQHCYTCGRLGHLARDC-DRQKEQKCYS 114
Query: 375 CNKVGHMSRDC 407
C K+GH+ +DC
Sbjct: 115 CGKLGHIQKDC 125
Score = 78.2 bits (191), Expect = 9e-15
Identities = 36/110 (32%), Positives = 55/110 (50%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
C+NCG SGH++++C D +R +R CY C GH++R+C +Q+
Sbjct: 67 CYNCGRSGHIAKDC----------------KDPKR--ERRQHCYTCGRLGHLARDCDRQK 108
Query: 192 NQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSREC 341
Q CY CG+ GH+ +DC Q+KCY C + GH++ C
Sbjct: 109 EQ-----KCYSCGKLGHIQKDCA----------QVKCYRCGEIGHVAINC 143
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 106 bits (264), Expect = 3e-23
Identities = 56/141 (39%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
C+NCGE+GH +REC + + + S+ Q T CY C GH+ R+CP
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT-CYACGTAGHLVRDCPSSP 77
Query: 192 N--QGSRNNGCYKCGENGHMARDCT----QEGGNDRQERQ-IKCYNCNQNGHMSRECPNG 350
N QG+ CYKCG GH+ARDC Q GG R + CY C GH +R+C G
Sbjct: 78 NPRQGAE---CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 351 QSDKKCYKCNKVGHMSRDCNE 413
KCY C K+GH S +C +
Sbjct: 135 V---KCYSCGKIGHRSFECQQ 152
Score = 87.4 bits (215), Expect = 1e-17
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +3
Query: 138 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 317
CYNC E GH +REC K + CY C + GH A +CT+ +++ CY C
Sbjct: 19 CYNCGENGHQARECTK-------GSICYNCNQTGHKASECTEP------QQEKTCYACGT 65
Query: 318 NGHMSRECP---NGQSDKKCYKCNKVGHMSRDCNE*G 419
GH+ R+CP N + +CYKC +VGH++RDC G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNG 102
Score = 78.6 bits (192), Expect = 7e-15
Identities = 35/76 (46%), Positives = 41/76 (53%)
Frame = +3
Query: 180 PKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSD 359
P+ G R CY CGENGH AR+CT+ CYNCNQ GH + EC Q +
Sbjct: 10 PQTTRPGPR---CYNCGENGHQARECTKGS---------ICYNCNQTGHKASECTEPQQE 57
Query: 360 KKCYKCNKVGHMSRDC 407
K CY C GH+ RDC
Sbjct: 58 KTCYACGTAGHLVRDC 73
Score = 61.6 bits (148), Expect = 9e-10
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNR-GDRRGGYERRSD---------DRRGNQRSTECYNCHETG 161
C+ CG GH++R+C N + G R GG+ + R +CY+C + G
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIG 144
Query: 162 HMSRECPKQRNQGSRNNGCYKCGENGHMARDCT 260
H S EC Q S CYKC + GH+A +CT
Sbjct: 145 HRSFEC----QQASDGQLCYKCNQPGHIAVNCT 173
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 89.7 bits (221), Expect = 3e-18
Identities = 53/172 (30%), Positives = 69/172 (40%), Gaps = 38/172 (22%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
CFNC + GH S +CP+ + R CYNC + GH SR+CP++R
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPR-----------------VCYNCQQPGHNSRDCPEER 301
Query: 192 NQ--------------------------------GSRNNGCYKCGENGHMARD---CTQE 266
GS NNG G G +
Sbjct: 302 KpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGG 361
Query: 267 GGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 413
GG DR ER C+NC Q GH S +CP + +++ CY C + GH SRDC E
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 89.7 bits (221), Expect = 3e-18
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
CFNC + GH S +CP+ + R CYNC + GH SR+CP++R
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPR-----------------VCYNCQQPGHNSRDCPEER 415
Query: 192 NQGSRNNGC---YKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDK 362
NG + G +G + GN+ + +KC+NC GH S ECP + +
Sbjct: 416 KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP--EPPR 473
Query: 363 KCYKCNKVGHMSRDC 407
C+ C + GH S +C
Sbjct: 474 GCFNCGEQGHRSNEC 488
Score = 70.9 bits (172), Expect = 1e-12
Identities = 49/191 (25%), Positives = 71/191 (37%), Gaps = 57/191 (29%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECY-----------NCHET 158
C+NC + GH SR+CP+ + R G+ S G + N E+
Sbjct: 284 CYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGES 343
Query: 159 GHMSRECPKQRN----------QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIK-CY 305
G S N +G RNN C+ C + GH + DC + ++ER+ + CY
Sbjct: 344 GFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEP----KKEREPRVCY 399
Query: 306 NCNQNGHMSRECPNGQSDK-----------------------------------KCYKCN 380
NC Q GH SR+CP + + KC+ C
Sbjct: 400 NCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCK 459
Query: 381 KVGHMSRDCNE 413
GH S +C E
Sbjct: 460 GEGHRSAECPE 470
Score = 64.7 bits (156), Expect = 1e-10
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +3
Query: 144 NCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNG 323
N HE+G K G N+G G G+ + GG DR ER C+NC Q G
Sbjct: 210 NNHESGFGGG---KSGGFGGGNSGGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPG 266
Query: 324 HMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 413
H S +CP + +++ CY C + GH SRDC E
Sbjct: 267 HRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.0 bits (79), Expect = 0.086
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 12 CFNCGESGHMSRECP 56
CFNCGE GH S ECP
Sbjct: 475 CFNCGEQGHRSNECP 489
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 82.8 bits (203), Expect = 4e-16
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 31/128 (24%)
Frame = +3
Query: 117 GNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE---------- 266
G +R+ C+NC + GH S +CP+ R + CY C + GH +R+CT+E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKE-REPRVCYNCQQPGHTSRECTEERKpreGRTGG 211
Query: 267 ----------GGND-----------RQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNK 383
GGND + +KC+NC GH S ECP + + C+ C +
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 384 VGHMSRDC 407
GH S +C
Sbjct: 270 QGHRSNEC 277
Score = 57.0 bits (136), Expect = 2e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 264 EGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 413
EGG+ ER C+NC Q GH S +CP + +++ CY C + GH SR+C E
Sbjct: 148 EGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 35.0 bits (79), Expect = 0.086
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 12 CFNCGESGHMSRECP 56
CFNCGE GH S ECP
Sbjct: 264 CFNCGEQGHRSNECP 278
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 70.5 bits (171), Expect = 2e-12
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Frame = +3
Query: 12 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 191
C NCGE GH+S+EC + C NC + GH + +C + R
Sbjct: 572 CHNCGEEGHISKECD-------------------KPKVPRFPCRNCEQLGHFASDCDQPR 612
Query: 192 NQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNG----QSD 359
C CG GH A DC Q + + C NC Q GH +++C N +
Sbjct: 613 ---VPRGPCRNCGIEGHFAVDCDQP-----KVPRGPCRNCGQEGHFAKDCQNERVRMEPT 664
Query: 360 KKCYKCNKVGHMSRDC 407
+ C +C + GH +C
Sbjct: 665 EPCRRCAEEGHWGYEC 680
Score = 66.2 bits (160), Expect = 3e-11
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = +3
Query: 102 SDDRRGN----QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEG 269
SD++RGN +R C+NC E GH+S+EC K + C C + GH A DC Q
Sbjct: 556 SDNQRGNWDGGERPRGCHNCGEEGHISKECDKPK---VPRFPCRNCEQLGHFASDCDQP- 611
Query: 270 GNDRQERQIKCYNCNQNGHMSRECPNGQSDK-KCYKCNKVGHMSRDC 407
+ + C NC GH + +C + + C C + GH ++DC
Sbjct: 612 ----RVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Frame = +3
Query: 27 ESGHMSRECPQNDNRG--DRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQG 200
+ G + P G + GG + + G S+ N + G S + G
Sbjct: 507 DQGFGDTDAPSKSGLGSFNTGGGAVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWDGG 566
Query: 201 SRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDK-KCYKC 377
R GC+ CGE GH++++C + + + C NC Q GH + +C + + C C
Sbjct: 567 ERPRGCHNCGEEGHISKECDKP-----KVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNC 621
Query: 378 NKVGHMSRDCNE 413
GH + DC++
Sbjct: 622 GIEGHFAVDCDQ 633
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,861,630
Number of Sequences: 369166
Number of extensions: 1171041
Number of successful extensions: 6107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5124
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)