Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B12
(245 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6XIM8|RS15A_DROYA 40S ribosomal protein S15a >gi|135095... 30 2.3
sp|P62246|RS15A_RAT 40S ribosomal protein S15a >gi|54039458... 29 3.8
sp|O42356|RX1_BRARE Retinal homeobox protein Rx1 29 3.8
sp|Q7KR04|RS15B_DROME 40S ribosomal protein S15Ab 28 6.6
sp|Q90YQ8|RS15A_ICTPU 40S ribosomal protein S15a 28 6.6
sp|Q8CDM1|ATAD2_MOUSE ATPase family AAA domain containing p... 28 8.6
>sp|Q6XIM8|RS15A_DROYA 40S ribosomal protein S15a
sp|P48149|RS15A_DROME 40S ribosomal protein S15Aa
Length = 130
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 193 INKASSKDP*KIYLRPWNHKDIILFLHTLIKHLNIDNLNIVDD 65
IN A + ++ LRP + K II FL ++KH I IVDD
Sbjct: 14 INNAEKRGKRQVLLRPCS-KVIIKFLTVMMKHGYIGEFEIVDD 55
>sp|P62246|RS15A_RAT 40S ribosomal protein S15a
sp|P62245|RS15A_MOUSE 40S ribosomal protein S15a
sp|P62244|RS15A_HUMAN 40S ribosomal protein S15a
Length = 130
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 199 RDINKASSKDP*KIYLRPWNHKDIILFLHTLIKHLNIDNLNIVDD 65
+ IN A + ++ +RP + K I+ FL ++KH I I+DD
Sbjct: 12 KSINNAEKRGKRQVLIRPCS-KVIVRFLTVMMKHGYIGEFEIIDD 55
>sp|O42356|RX1_BRARE Retinal homeobox protein Rx1
Length = 330
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 100 HLNIDNLNIVDDFCTSRP*FH 38
HL++D +N+VDD C S FH
Sbjct: 2 HLSLDTMNMVDDSCLSPSNFH 22
>sp|Q7KR04|RS15B_DROME 40S ribosomal protein S15Ab
Length = 130
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 193 INKASSKDP*KIYLRPWNHKDIILFLHTLIKHLNIDNLNIVDD 65
IN A + ++ LRP + K II FL ++KH I IV+D
Sbjct: 14 INNAEKRGKRQVLLRPCS-KVIIKFLTVMMKHGYIGEFEIVED 55
>sp|Q90YQ8|RS15A_ICTPU 40S ribosomal protein S15a
Length = 130
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 193 INKASSKDP*KIYLRPWNHKDIILFLHTLIKHLNIDNLNIVDD 65
IN A + ++ +RP + K I+ FL ++KH I I+DD
Sbjct: 14 INNAEKRGKAQVLIRPCS-KVIVRFLTVMMKHGYIGEFEIIDD 55
>sp|Q8CDM1|ATAD2_MOUSE ATPase family AAA domain containing protein 2
Length = 1040
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 190 NKASSKDP*KIYLRPWNHKDIILFLHTLIKH 98
+K + K+ KI+ R WN K + +FL L +H
Sbjct: 255 DKNARKEILKIHTRDWNPKPVDMFLEELAEH 285
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,505,579
Number of Sequences: 369166
Number of extensions: 462875
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)