Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B10
(474 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95858|TSN15_HUMAN Tetraspanin-15 (Tspan-15) (Transmembr... 32 0.97
sp|Q26499|IM23_SCHHA 23 kDa integral membrane protein (Sh23) 30 2.2
sp|P08962|CD63_HUMAN CD63 antigen (Melanoma-associated anti... 30 2.8
sp|O35566|C151_MOUSE Platelet-endothelial tetraspan antigen... 29 6.3
sp|P19331|IM23_SCHMA 23 kDa integral membrane protein (SM23) 28 8.2
>sp|O95858|TSN15_HUMAN Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily member 15)
(Tetraspan NET-7)
Length = 294
Score = 31.6 bits (70), Expect = 0.97
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 3 DVSGIIDLIQAKFKCCGASSSADFVAN 83
D I+D +Q KFKCCG D+ N
Sbjct: 140 DFKNIMDFVQKKFKCCGGEDYRDWSKN 166
>sp|Q26499|IM23_SCHHA 23 kDa integral membrane protein (Sh23)
Length = 218
Score = 30.4 bits (67), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 3 DVSGIIDLIQAKFKCCGASSSADFVAN 83
+++ +DLIQ+ F CCGA D+ N
Sbjct: 130 EITEFMDLIQSSFHCCGAKGPQDYGPN 156
>sp|P08962|CD63_HUMAN CD63 antigen (Melanoma-associated antigen ME491)
(Lysosome-associated membrane glycoprotein 3) (LAMP-3)
(Ocular melanoma-associated antigen) (OMA81H)
(Granulophysin) (Tetraspanin-30) (Tspan-30)
Length = 238
Score = 30.0 bits (66), Expect = 2.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 9 SGIIDLIQAKFKCCGASSSADF 74
+ I+D +QA FKCCGA++ D+
Sbjct: 133 ASILDRMQADFKCCGAANYTDW 154
>sp|O35566|C151_MOUSE Platelet-endothelial tetraspan antigen 3 (PETA-3) (GP27) (Membrane
glycoprotein SFA-1) (CD151 antigen)
Length = 253
Score = 28.9 bits (63), Expect = 6.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 6 VSGIIDLIQAKFKCCGASSSADF 74
VS +D +Q +F CCG+++S D+
Sbjct: 142 VSSAVDKLQQEFHCCGSNNSQDW 164
>sp|P19331|IM23_SCHMA 23 kDa integral membrane protein (SM23)
Length = 218
Score = 28.5 bits (62), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 3 DVSGIIDLIQAKFKCCGASSSADFVAN 83
+++ ++LIQ+ F CCGA D+ N
Sbjct: 130 EITEFMNLIQSSFHCCGAKGPDDYRGN 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,633,744
Number of Sequences: 369166
Number of extensions: 884147
Number of successful extensions: 1808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)