Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B04
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5VXT5|SYPL2_HUMAN Synaptophysin-like protein 2 33 0.17
sp|Q8TBG9|SYNPR_HUMAN Synaptoporin 32 0.48
sp|Q8BGN8|SYNPR_MOUSE Synaptoporin 32 0.48
sp|O89104|SYPL2_MOUSE Synaptophysin-like protein 2 (Mitsugu... 32 0.48
sp|P22831|SYNPR_RAT Synaptoporin 32 0.48
sp|O62646|SYPL2_RABIT Synaptophysin-like protein 2 (Mitsugu... 32 0.48
sp|P07825|SYPH_RAT Synaptophysin (Major synaptic vesicle pr... 30 1.4
sp|P08247|SYPH_HUMAN Synaptophysin (Major synaptic vesicle ... 30 1.4
sp|Q62277|SYPH_MOUSE Synaptophysin (Major synaptic vesicle ... 30 1.4
sp|P20488|SYPH_BOVIN Synaptophysin (Major synaptic vesicle ... 30 1.4
>sp|Q5VXT5|SYPL2_HUMAN Synaptophysin-like protein 2
Length = 272
Score = 33.5 bits (75), Expect = 0.17
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 3 WAANLWFLFKETLWYERRNPSDQ 71
WA N WF+FKET W+ + DQ
Sbjct: 226 WAGNCWFVFKETPWHGQGQGQDQ 248
>sp|Q8TBG9|SYNPR_HUMAN Synaptoporin
Length = 265
Score = 32.0 bits (71), Expect = 0.48
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 3 WAANLWFLFKETLWY 47
WA N+WF+FKET W+
Sbjct: 190 WAGNIWFVFKETGWH 204
>sp|Q8BGN8|SYNPR_MOUSE Synaptoporin
Length = 265
Score = 32.0 bits (71), Expect = 0.48
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 3 WAANLWFLFKETLWY 47
WA N+WF+FKET W+
Sbjct: 190 WAGNIWFVFKETGWH 204
>sp|O89104|SYPL2_MOUSE Synaptophysin-like protein 2 (Mitsugumin-29) (Mg29)
Length = 264
Score = 32.0 bits (71), Expect = 0.48
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 3 WAANLWFLFKETLWYERRNPSDQIIGNES 89
WA N WF+FKET W+ + Q ES
Sbjct: 226 WAGNCWFVFKETPWHGQGQDQGQGPSQES 254
>sp|P22831|SYNPR_RAT Synaptoporin
Length = 265
Score = 32.0 bits (71), Expect = 0.48
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 3 WAANLWFLFKETLWY 47
WA N+WF+FKET W+
Sbjct: 190 WAGNIWFVFKETGWH 204
>sp|O62646|SYPL2_RABIT Synaptophysin-like protein 2 (Mitsugumin-29)
Length = 264
Score = 32.0 bits (71), Expect = 0.48
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 3 WAANLWFLFKETLWYERRNPSDQIIGNES 89
WA N WF+FKET W+ + Q ES
Sbjct: 226 WAGNCWFVFKETPWHGQGQDQGQGPSQES 254
>sp|P07825|SYPH_RAT Synaptophysin (Major synaptic vesicle protein p38)
Length = 307
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 3 WAANLWFLFKETLW 44
W NLWF+FKET W
Sbjct: 210 WVGNLWFVFKETGW 223
>sp|P08247|SYPH_HUMAN Synaptophysin (Major synaptic vesicle protein p38)
Length = 313
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 3 WAANLWFLFKETLW 44
W NLWF+FKET W
Sbjct: 215 WVGNLWFVFKETGW 228
>sp|Q62277|SYPH_MOUSE Synaptophysin (Major synaptic vesicle protein p38) (BM89 antigen)
Length = 314
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 3 WAANLWFLFKETLW 44
W NLWF+FKET W
Sbjct: 216 WVGNLWFVFKETGW 229
>sp|P20488|SYPH_BOVIN Synaptophysin (Major synaptic vesicle protein p38)
Length = 313
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 3 WAANLWFLFKETLW 44
W NLWF+FKET W
Sbjct: 215 WVGNLWFVFKETGW 228
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,257,368
Number of Sequences: 369166
Number of extensions: 617889
Number of successful extensions: 1498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)