Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A17
(694 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 279 6e-75
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 265 9e-71
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 265 1e-70
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 264 1e-70
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 264 1e-70
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 253 4e-67
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 249 5e-66
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 242 6e-64
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 238 1e-62
sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (T... 229 7e-60
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 279 bits (713), Expect = 6e-75
Identities = 139/219 (63%), Positives = 164/219 (74%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
V+WAR + EK ++VSNVF +E+ SRWHTKKL RKTHKGLRKVAC
Sbjct: 194 VKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHP+RVS VARAGQKGYHHRTEINKKIYRIG G+ + +G + IK NAST+Y
Sbjct: 254 IGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK----DGKV--IKNNASTEY 307
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DLT K+ITPMGGFPHYGEV NDF+MIKG C+G++KR+ITLRKSL+ TK + E+I LKF
Sbjct: 308 DLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKF 367
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQEAKEIAA 659
IDTS+K GHGRFQT +K MGPLKKDRL++EA A
Sbjct: 368 IDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTA 406
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 265 bits (677), Expect = 9e-71
Identities = 131/213 (61%), Positives = 161/213 (75%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
++WAR E++V VS VF +E+ SRWHTKKL RKTH+GLRKVAC
Sbjct: 194 LDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + +G + IK NASTDY
Sbjct: 254 IGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK----DGKL--IKNNASTDY 307
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DL+ K+I P+GGF HYGEV NDF+M+KG +GT+KR++TLRKSL+ TK ++ E+I LKF
Sbjct: 308 DLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQE 641
IDT++KFGHGRFQT EEKK MGPLKKDR+ +E
Sbjct: 368 IDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKE 400
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 265 bits (676), Expect = 1e-70
Identities = 131/213 (61%), Positives = 161/213 (75%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
++WAR E++V V+ VF +E+ SRWHTKKL RKTH+GLRKVAC
Sbjct: 194 LDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + +G + IK NASTDY
Sbjct: 254 IGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK----DGKL--IKNNASTDY 307
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DL+ K+I P+GGF HYGEV NDFIM+KG +GT+KR++TLRKSL+ TK ++ E+I LKF
Sbjct: 308 DLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQE 641
IDT++KFGHGRFQT EEKK MGPLKKDR+ +E
Sbjct: 368 IDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 264 bits (675), Expect = 1e-70
Identities = 130/213 (61%), Positives = 161/213 (75%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
++WAR E++V V+ VF +E+ SRWHTKKL RKTH+GLRKVAC
Sbjct: 194 LDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + +G + IK NASTDY
Sbjct: 254 IGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK----DGKL--IKNNASTDY 307
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DL+ K+I P+GGF HYGEV NDF+M+KG +GT+KR++TLRKSL+ TK ++ E+I LKF
Sbjct: 308 DLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQE 641
IDT++KFGHGRFQT EEKK MGPLKKDR+ +E
Sbjct: 368 IDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 264 bits (675), Expect = 1e-70
Identities = 131/213 (61%), Positives = 160/213 (75%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
++WAR E++V V+ VF +E+ SRWHTKKL RKTH+GLRKVAC
Sbjct: 194 LDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHPARV+F VARAGQKGYHHRTEINKKIY+IG G + +G + IK NASTDY
Sbjct: 254 IGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIK----DGKL--IKNNASTDY 307
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DL+ K+I P+GGF HYGEV NDFIM+KG +GT+KR++TLRKSL+ TK ++ E+I LKF
Sbjct: 308 DLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKF 367
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQE 641
IDT++KFGHGRFQT EEKK MGPLKKDR+ +E
Sbjct: 368 IDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 253 bits (645), Expect = 4e-67
Identities = 127/216 (58%), Positives = 156/216 (72%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
V WA++ EK+V V +VF+ +EV SRWHTKKL RKTHKGLRKVAC
Sbjct: 194 VAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHPARV ++ARAGQKGYHHRTE+NKKI+RIG G + +G + +K NAST Y
Sbjct: 254 IGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHME----DGKL--VKNNASTSY 307
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
D+T K+ITP+GGFPHYGEV NDF+M+KG GT+KR+ITLRKSL+ Q+ E I LKF
Sbjct: 308 DVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKF 367
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQEAKE 650
IDT++KFGHGRFQT++EK+ MGP KK L +E E
Sbjct: 368 IDTTSKFGHGRFQTAQEKRAFMGPQKK-HLEKETPE 402
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 249 bits (636), Expect = 5e-66
Identities = 124/212 (58%), Positives = 150/212 (70%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
V+WAR + EK+V V +VFA +E+ SRWHTKKL RKTHKGLRKVAC
Sbjct: 194 VDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHP+RV F VARAGQKGYHHRTE+NKKIYR+G + EG K N TDY
Sbjct: 254 IGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTE----EG-----KKNGGTDY 304
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
D+T K++ PMGGFPHYG V DF+MI+G C+G++KR ITLRKSL+ TK + E+I LK+
Sbjct: 305 DITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKW 364
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQ 638
IDTS+KFGHGRFQT EK+ MG LKKD + +
Sbjct: 365 IDTSSKFGHGRFQTHAEKRAFMGKLKKDLIAE 396
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 242 bits (618), Expect = 6e-64
Identities = 129/216 (59%), Positives = 155/216 (71%), Gaps = 1/216 (0%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
V+WAR + EK+V+V VFA +E+ SRWHTKKL RKTHKGLRKVAC
Sbjct: 194 VDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHP+RV+F VARAGQKG+HHRT IN KIYRIG A TE EG K N ST++
Sbjct: 254 IGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKS--ALTE--EG-----KNNGSTEF 304
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DLT K ITPMGGFP YG V D+IM++G+ +G +KRLITLRKSL+T TK + E+I LK+
Sbjct: 305 DLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKW 364
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQ-EAK 647
IDTS+K GHGRFQT+ EK+ MG LK+D L + EAK
Sbjct: 365 IDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAEAEAK 400
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 238 bits (606), Expect = 1e-62
Identities = 122/212 (57%), Positives = 151/212 (71%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
V+WAR + EK+++V VF+ +E+ SRWHTKKL RKTHKGLRKVAC
Sbjct: 194 VDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVAC 253
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHP+RV+F VARAGQKG+HHRT IN KIYRIG A TE EG K N ST++
Sbjct: 254 IGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKS--ALTE--EG-----KNNGSTEF 304
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
DLT K I PMGGFP YG V D++M++G+ +G +KRLITLRKSL+T TK + E+I LK+
Sbjct: 305 DLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKW 364
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKDRLRQ 638
IDTS+K GHGRFQT+ EK+ MG LK+D L +
Sbjct: 365 IDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance
protein)
Length = 387
Score = 229 bits (583), Expect = 7e-60
Identities = 115/208 (55%), Positives = 138/208 (66%)
Frame = +3
Query: 3 VEWARSNFEKEVRVSNVFAPNEVXXXXXXXXXXXXXXXXSRWHTKKLQRKTHKGLRKVAC 182
V+WAR +FEK V V +VF NE+ RW TKKL RKTH+GLRKVAC
Sbjct: 192 VDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVAC 251
Query: 183 IGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGLKAQTEAAEGIIGNIKGNASTDY 362
IG WHPA V ++VARAGQ+GYH RT IN KIYR+G G + + N +T +
Sbjct: 252 IGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG-------------DDEANGATSF 298
Query: 363 DLTVKNITPMGGFPHYGEVKNDFIMIKGSCMGTRKRLITLRKSLMTTTKLQSTEEICLKF 542
D T K ITPMGGF HYGE+KNDFIM+KG G RKR++TLRKSL T T ++ EE+ LK+
Sbjct: 299 DRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKW 358
Query: 543 IDTSAKFGHGRFQTSEEKKQIMGPLKKD 626
IDT++KFG GRFQT EK MG LKKD
Sbjct: 359 IDTASKFGKGRFQTPAEKHAFMGTLKKD 386
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,159,233
Number of Sequences: 369166
Number of extensions: 1481327
Number of successful extensions: 4017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3971
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)