Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A14
(757 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9T9W1|COX1_PANTR Cytochrome c oxidase subunit 1 (Cytoch... 266 6e-71
sp|P41310|COX1_DIDMA Cytochrome c oxidase subunit 1 (Cytoch... 265 8e-71
sp|P00395|COX1_HUMAN Cytochrome c oxidase subunit 1 (Cytoch... 265 8e-71
sp|P92692|COX1_PONPA Cytochrome c oxidase subunit 1 (Cytoch... 265 8e-71
sp|Q9T9X0|COX1_PANPA Cytochrome c oxidase subunit 1 (Cytoch... 265 8e-71
sp|P05503|COX1_RAT Cytochrome c oxidase subunit 1 (Cytochro... 265 1e-70
sp|P92661|COX1_MACRO Cytochrome c oxidase subunit 1 (Cytoch... 265 1e-70
sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytoch... 264 2e-70
sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytoch... 263 3e-70
sp|Q6EGH7|COX1_ZYGTR Cytochrome c oxidase subunit 1 (Cytoch... 263 3e-70
>sp|Q9T9W1|COX1_PANTR Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 513
Score = 266 bits (679), Expect = 6e-71
Identities = 138/253 (54%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DL I SLH+AGISSILG+INFI TI + P + P
Sbjct: 140 GASVDLTIFSLHLAGISSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AM+ IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL GS + S + W +N+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGSNMK-----WSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|P41310|COX1_DIDMA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 513
Score = 265 bits (678), Expect = 8e-71
Identities = 139/253 (54%), Positives = 170/253 (67%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DLAI SLH+AGISSILG+INFI TI + P + + P
Sbjct: 140 GASVDLAIFSLHLAGISSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AM+ IGFLGFIV AHHM+ VGLD DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL G + S + W +N+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGGNIK-----WSPAMLWALGFIFLFTIGGLTGIVLANSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|P00395|COX1_HUMAN Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 513
Score = 265 bits (678), Expect = 8e-71
Identities = 137/253 (54%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DL I SLH+AG+SSILG+INFI TI + P + P
Sbjct: 140 GASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AM+ IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL GS + S + W +N+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGSNMK-----WSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|P92692|COX1_PONPA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 514
Score = 265 bits (678), Expect = 8e-71
Identities = 139/253 (54%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DL I SLH+AGISSILG+INFI TI + P + + P
Sbjct: 140 GASVDLTIFSLHLAGISSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
+Y GKE FG++GM++AM+ IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 HYSGKEEPFGYMGMVWAMVSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL GS S I W +N+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGSN-----TKWSAAILWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|Q9T9X0|COX1_PANPA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 513
Score = 265 bits (678), Expect = 8e-71
Identities = 137/253 (54%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DL I SLH+AG+SSILG+INFI TI + P + P
Sbjct: 140 GASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AM+ IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL GS + S + W +N+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGSNMK-----WSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|P05503|COX1_RAT Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 514
Score = 265 bits (677), Expect = 1e-70
Identities = 139/253 (54%), Positives = 168/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
GV +DL I SLH+AG+SSILG+INFI TI + P + P
Sbjct: 140 GVSVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFGIISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++ M+ IGFLGFIV AHHM+ VGLD DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWTMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL G + S + W SN+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGGNIK-----WSPAMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|P92661|COX1_MACRO Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 513
Score = 265 bits (677), Expect = 1e-70
Identities = 138/253 (54%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DLAI SLH+AG+SSILG+INFI TI + P + P
Sbjct: 140 GASVDLAIFSLHLAGVSSILGAINFITTIINMKPPALTQYQTPLFVWSVMITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AM+ IGFLGFIV AHHM+ VGLD DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL G + S + W +N+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGGNIK-----WSPALLWALGFIFLFTIGGLTGIVLANSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
>sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 264 bits (674), Expect = 2e-70
Identities = 139/253 (54%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DLAI SLH+AG+SSILG+INFI TI + P + + P
Sbjct: 141 GASVDLAIFSLHLAGVSSILGAINFITTIINMKPPALSQYQTPLFVWSVLITAILLLLSL 200
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFGIISH+
Sbjct: 201 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVA 260
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AML IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTGIK
Sbjct: 261 YYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIK 320
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL G + + W +N+SLDI LHDTYYVV
Sbjct: 321 VFSWLATLHGGTIK-----WDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVV 375
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 376 AHFHYVLSMGAVF 388
>sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 263 bits (673), Expect = 3e-70
Identities = 140/253 (55%), Positives = 168/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DLAI SLH+AG+SSILG+INFI T + P + + P
Sbjct: 141 GASVDLAIFSLHLAGVSSILGAINFITTAINMKPPALSQYQTPLFVWSVLITAILLLLSL 200
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDPVL+QH+F FFGHPEVYILI+PGFGIISH+
Sbjct: 201 PVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHVVT 260
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AML IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTGIK
Sbjct: 261 YYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIK 320
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL G + I W +N+SLDI LHDTYYVV
Sbjct: 321 VFSWLATLHGGTIK-----WDPPILWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVV 375
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 376 AHFHYVLSMGAVF 388
>sp|Q6EGH7|COX1_ZYGTR Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 263 bits (673), Expect = 3e-70
Identities = 137/253 (54%), Positives = 168/253 (66%), Gaps = 2/253 (0%)
Frame = +1
Query: 4 GVGLDLAILSLHVAGISSILGSINFIVTIYGI--PDYNMVRLPXXXXXXXXXXXXXXXXX 177
G +DL I SLH+AG+SSILG+INFI TI + P + P
Sbjct: 140 GASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLITAVLLLLSL 199
Query: 178 XXXXXXXTMLITDRNVNTSFFDSGCGGDPVLFQHMF*FFGHPEVYILIIPGFGIISHLCM 357
TML+TDRN+NT+FFD GGDP+L+QH+F FFGHPEVYILI+PGFG+ISH+
Sbjct: 200 PVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVT 259
Query: 358 YYRGKELVFGHLGMLFAMLRIGFLGFIV*AHHMYVVGLDYDTRSYFTAATMIIAVPTGIK 537
YY GK+ FG++GM++AM+ IGFLGFIV AHHM+ VG+D DTR+YFT+ATMIIA+PTG+K
Sbjct: 260 YYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVK 319
Query: 538 VFS*IATLCGSGFQDLLNNRSVVINWXXXXXXXXXXXXXXXXXXSNASLDIRLHDTYYVV 717
VFS +ATL G + S + W SN+SLDI LHDTYYVV
Sbjct: 320 VFSWLATLHGGNIK-----WSPAMLWALGFIFLFTIGGLTGIVLSNSSLDIVLHDTYYVV 374
Query: 718 AHFHYVLSMGAVF 756
AHFHYVLSMGAVF
Sbjct: 375 AHFHYVLSMGAVF 387
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,798,762
Number of Sequences: 369166
Number of extensions: 1125774
Number of successful extensions: 2920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2531
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)