Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A10
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATP... 373 e-103
sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATP... 373 e-103
sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPas... 373 e-103
sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPas... 373 e-103
sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATP... 372 e-103
sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum AT... 369 e-102
sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum AT... 367 e-101
sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homo... 342 1e-93
sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog 341 1e-93
sp|Q9SCN8|CD48D_ARATH Putative cell division control protei... 340 2e-93
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 373 bits (958), Expect = e-103
Identities = 187/241 (77%), Positives = 207/241 (85%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELDS
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLDQ
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIRE
Sbjct: 642 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQT
Sbjct: 702 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQT 761
Query: 722 L 724
L
Sbjct: 762 L 762
Score = 145 bits (366), Expect = 1e-34
Identities = 76/179 (42%), Positives = 112/179 (62%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD+I
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D+
Sbjct: 310 APKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
+ I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 373 bits (958), Expect = e-103
Identities = 187/241 (77%), Positives = 207/241 (85%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELDS
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLDQ
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIRE
Sbjct: 642 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQT
Sbjct: 702 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQT 761
Query: 722 L 724
L
Sbjct: 762 L 762
Score = 145 bits (366), Expect = 1e-34
Identities = 76/179 (42%), Positives = 112/179 (62%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD+I
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D+
Sbjct: 310 APKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
+ I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 373 bits (958), Expect = e-103
Identities = 187/241 (77%), Positives = 207/241 (85%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELDS
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLDQ
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIRE
Sbjct: 642 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQT
Sbjct: 702 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQT 761
Query: 722 L 724
L
Sbjct: 762 L 762
Score = 145 bits (366), Expect = 1e-34
Identities = 76/179 (42%), Positives = 112/179 (62%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD+I
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D+
Sbjct: 310 APKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
+ I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 373 bits (958), Expect = e-103
Identities = 187/241 (77%), Positives = 207/241 (85%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELDS
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLDQ
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 641
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIRE
Sbjct: 642 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQT
Sbjct: 702 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQT 761
Query: 722 L 724
L
Sbjct: 762 L 762
Score = 145 bits (366), Expect = 1e-34
Identities = 76/179 (42%), Positives = 112/179 (62%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD+I
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D+
Sbjct: 310 APKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
+ I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit)
Length = 805
Score = 372 bits (954), Expect = e-103
Identities = 188/241 (78%), Positives = 206/241 (85%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELDS
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLDQ
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQ 641
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDEKSR+ ILKANLRKSP+AKDVDV+++AK+T+GFSGADLTEICQRACK AIRE
Sbjct: 642 LIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRE 701
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE +I+ RD+Q+ ++ DPVPEI R HFEEAM+ ARRSV+DND+RKYEMFAQT
Sbjct: 702 SIENEIRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQT 761
Query: 722 L 724
L
Sbjct: 762 L 762
Score = 144 bits (364), Expect = 2e-34
Identities = 75/179 (41%), Positives = 112/179 (62%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD+I
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D+
Sbjct: 310 APKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
+ I +PD R++IL+ + + ++ DVD+ +A THG GADL +C A QAIR+
Sbjct: 367 VDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48
homolog 2)
Length = 810
Score = 369 bits (948), Expect = e-102
Identities = 194/275 (70%), Positives = 216/275 (78%), Gaps = 4/275 (1%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRD+FDKAR AAPCVLFFDELDS
Sbjct: 527 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDS 586
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IAK INQ+LTEMDGM+AKKNVFIIGATNRPDIID A+LRPGRLDQ
Sbjct: 587 IAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQ 646
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDE SR+QI KA+LRK+P++ D+D+N++AK T GFSGADLTEICQRACK AIRE
Sbjct: 647 LIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLAIRE 706
Query: 542 CIEADI---KAARDQQSKGGEPMEDDI-DPVPEITRKHFEEAMKFARRSVTDNDVRKYEM 709
IE +I K +D+ ++G E MED++ DPVPEITR HFEEAMKFARRSVTDND+RKYEM
Sbjct: 707 SIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKFARRSVTDNDIRKYEM 766
Query: 710 FAQTLXXXXXXXXXXXXPGANNEASNDFSRPSAGN 814
FAQTL PG A +P GN
Sbjct: 767 FAQTLQQSRGFGNNFKFPGEAPSA----GQPVGGN 797
Score = 144 bits (362), Expect = 4e-34
Identities = 76/182 (41%), Positives = 111/182 (60%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F + + +P +LF DE+D+I
Sbjct: 255 GKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAI 314
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + +V +I ATNRP+ ID A+ R GR D+
Sbjct: 315 APKREKAHGEVEKRI---VSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDRE 371
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIREC 544
I I +PD R++IL+ + + + +DVD+ +A HGF GADL +C A Q IRE
Sbjct: 372 IDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIREK 431
Query: 545 IE 550
+E
Sbjct: 432 ME 433
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48
homolog 1)
Length = 809
Score = 367 bits (943), Expect = e-101
Identities = 193/260 (74%), Positives = 212/260 (81%), Gaps = 5/260 (1%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRD+FDKAR AAPCVLFFDELDS
Sbjct: 528 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDS 587
Query: 182 IAKXXXXXXXXXXXXXXXX-INQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 358
IAK INQ+LTEMDGM+AKKNVFIIGATNRPDIID A+LRPGRLD
Sbjct: 588 IAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLD 647
Query: 359 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 538
QLIYIPLPDE SR QILKA+LRK+P++KD+D+ ++AK T GFSGADLTEICQRACK AIR
Sbjct: 648 QLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIR 707
Query: 539 ECIEADI---KAARDQQSKGGEPMEDD-IDPVPEITRKHFEEAMKFARRSVTDNDVRKYE 706
E IE +I K +D+Q++G E MEDD +DPVPEITR HFEEAMKFARRSVTDND+RKYE
Sbjct: 708 ESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYE 767
Query: 707 MFAQTLXXXXXXXXXXXXPG 766
MFAQTL PG
Sbjct: 768 MFAQTLQQSRGFGNNFKFPG 787
Score = 145 bits (365), Expect = 2e-34
Identities = 76/182 (41%), Positives = 111/182 (60%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE + F I GPE+++ GESE+N+R F++ + P +LF DE+D+I
Sbjct: 256 GKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAI 315
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ + N+ +I ATNRP+ ID A+ R GR D+
Sbjct: 316 APKREKTNGEVERRI---VSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDRE 372
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIREC 544
I I +PD R++IL+ + + +A DVD+ +A HGF GADL +C A Q IRE
Sbjct: 373 IDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREK 432
Query: 545 IE 550
+E
Sbjct: 433 ME 434
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E (AtCDC48e) (Transitional
endoplasmic reticulum ATPase E)
Length = 810
Score = 342 bits (876), Expect = 1e-93
Identities = 177/243 (72%), Positives = 199/243 (81%), Gaps = 2/243 (0%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVR+IFDKARQ+APCVLFFDELDS
Sbjct: 525 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 584
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IA +NQLLTEMDGM+AKK VFIIGATNRPDIID+A+LRPGRLDQ
Sbjct: 585 IATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQ 644
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDE SR+ I KA LRKSP+AKDVDV +AK T GFSGAD+TEICQRACK AIRE
Sbjct: 645 LIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRE 704
Query: 542 CIEADIKAARDQQSKGGEPMEDDI--DPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFA 715
IE DI+ R ++S+ E ME+D+ D V EI HFEE+MK+ARRSV+D D+RKY+ FA
Sbjct: 705 NIEKDIENER-RRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFA 763
Query: 716 QTL 724
QTL
Sbjct: 764 QTL 766
Score = 152 bits (384), Expect = 1e-36
Identities = 78/179 (43%), Positives = 117/179 (65%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DE+DSI
Sbjct: 253 GKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 312
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ ++ +V ++GATNRP+ ID A+ R GR D+
Sbjct: 313 APKREKTNGEVERRI---VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDRE 369
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
I I +PDE R+++L+ + + +A+DVD+ ++K THG+ GADL +C A Q IRE
Sbjct: 370 IDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIRE 428
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog
Length = 805
Score = 341 bits (875), Expect = 1e-93
Identities = 173/241 (71%), Positives = 198/241 (82%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVR+IFDKARQ+APCVLFFDELDS
Sbjct: 526 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IA +NQLLTEMDGM+AKK VFIIGATNRPDIID A+LRPGRLDQ
Sbjct: 586 IATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDE SR QI KA LRKSP++KD+D+ +AK T GFSGAD+TEICQRACK AIRE
Sbjct: 646 LIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIRE 705
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE DI+ + +Q + + M++D+D VPEI HFEE+MK+ARRSV+D D+RKY+ FAQT
Sbjct: 706 NIEKDIEREKRRQ-ENPDSMDEDVDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQT 764
Query: 722 L 724
L
Sbjct: 765 L 765
Score = 152 bits (383), Expect = 1e-36
Identities = 83/218 (38%), Positives = 133/218 (61%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DE+DSI
Sbjct: 254 GKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ ++ +V ++GATNRP+ ID A+ R GR D+
Sbjct: 314 APKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDRE 370
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIREC 544
I I +PDE R+++L + + +A++VD+ ++K THG+ GADL +C A Q IRE
Sbjct: 371 IDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISKDTHGYVGADLAALCTEAALQCIRE- 429
Query: 545 IEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAM 658
+ D+ D + ++ ++ +T +HF+ A+
Sbjct: 430 -KMDVLDLED------DTIDAEVLNSMAVTNEHFQTAL 460
>sp|Q9SCN8|CD48D_ARATH Putative cell division control protein 48 homolog D (AtCDC48d)
(Transitional endoplasmic reticulum ATPase D)
Length = 815
Score = 340 bits (873), Expect = 2e-93
Identities = 181/285 (63%), Positives = 208/285 (72%)
Frame = +2
Query: 2 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDS 181
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQ+APCVLFFDELDS
Sbjct: 526 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585
Query: 182 IAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQ 361
IA +NQLLTEMDGM+AKK VFIIGATNRPDIID A+LRPGRLDQ
Sbjct: 586 IATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645
Query: 362 LIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIRE 541
LIYIPLPDE+SR QI K+ LRKSP+AKDVD+ +AK T GFSGAD+TEICQR+CK AIRE
Sbjct: 646 LIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRE 705
Query: 542 CIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQT 721
IE DI+ R ++++ E ME+D + + EI HFEE+MK+ARRSV+D D+RKY+ FAQT
Sbjct: 706 NIEKDIEKER-KRAESPEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQT 764
Query: 722 LXXXXXXXXXXXXPGANNEASNDFSRPSAGNQQSNIPVSAGGAGA 856
L P A + F P A + A GA
Sbjct: 765 LQQSRGFGSEFRFPDAPTGTTGAF--PGAAATVGGVDPFATSGGA 807
Score = 152 bits (385), Expect = 9e-37
Identities = 85/218 (38%), Positives = 133/218 (61%)
Frame = +2
Query: 5 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELDSI 184
GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DE+DSI
Sbjct: 254 GKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313
Query: 185 AKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLDQL 364
A ++QLLT MDG+ ++ +V ++GATNRP+ ID A+ R GR D+
Sbjct: 314 APKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDRE 370
Query: 365 IYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIREC 544
I I +PDE R+++L+ + + +A+DVD+ ++K THG+ GADL +C A Q IRE
Sbjct: 371 IDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIRE- 429
Query: 545 IEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAM 658
+ D+ D E ++ +I ++ HF+ A+
Sbjct: 430 -KMDVIDLDD------EEIDAEILNSMAVSNDHFQTAL 460
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,124,990
Number of Sequences: 369166
Number of extensions: 1794349
Number of successful extensions: 5587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5253
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)