Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A03
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 408 e-114
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 407 e-113
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 407 e-113
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 407 e-113
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 407 e-113
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 406 e-113
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 405 e-113
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 403 e-112
sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha) 400 e-111
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 396 e-110
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 408 bits (1049), Expect = e-114
Identities = 192/216 (88%), Positives = 209/216 (96%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEF
Sbjct: 64 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 653
P AVAFVPISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 184 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 407 bits (1047), Expect = e-113
Identities = 190/217 (87%), Positives = 209/217 (96%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKL
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEF
Sbjct: 64 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 656
PD VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 184 NPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 407 bits (1046), Expect = e-113
Identities = 190/217 (87%), Positives = 208/217 (95%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKL
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEF
Sbjct: 64 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 656
PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 184 NPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 407 bits (1046), Expect = e-113
Identities = 190/217 (87%), Positives = 208/217 (95%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKL
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEF
Sbjct: 64 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 656
PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 184 NPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 407 bits (1046), Expect = e-113
Identities = 190/217 (87%), Positives = 208/217 (95%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKL
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEF
Sbjct: 64 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 656
PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 184 NPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 406 bits (1044), Expect = e-113
Identities = 190/216 (87%), Positives = 207/216 (95%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKL
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEF
Sbjct: 64 KAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLAYTLGVKQ+IVG+NKMDSTEPP+S KR+EEI KEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVSTYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 653
PD VAFVPISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 184 NPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 405 bits (1040), Expect = e-113
Identities = 190/216 (87%), Positives = 208/216 (96%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL
Sbjct: 4 EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEF
Sbjct: 64 KAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDS+EPP+S+ R+EEIKKEV SY+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKKEVSSYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 653
P AVAFVPISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 184 NPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 403 bits (1035), Expect = e-112
Identities = 191/216 (88%), Positives = 204/216 (94%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL
Sbjct: 4 EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG GEF
Sbjct: 64 KAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPPFS+ RFEEIKKEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 653
P AVAFVPISGW+GDNM+E S +PWYKGW I RK
Sbjct: 184 NPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERK 219
>sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 400 bits (1029), Expect = e-111
Identities = 188/216 (87%), Positives = 206/216 (95%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL
Sbjct: 4 EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGTGEF
Sbjct: 64 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ R+EEIKKEV SY+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 653
P +VAFVPISGW+GDNM+E S MPW+KGW + RK
Sbjct: 184 NPASVAFVPISGWHGDNMLEPSEKMPWFKGWSVERK 219
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 396 bits (1018), Expect = e-110
Identities = 186/216 (86%), Positives = 202/216 (93%)
Frame = +3
Query: 6 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 185
+K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVLDKL
Sbjct: 4 EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKL 63
Query: 186 KAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGTGEF 365
KAERERGITIDI+LWKFET KFY+T+IDAPGHRDFIKNMITGTSQADCAVL+VA G GEF
Sbjct: 64 KAERERGITIDISLWKFETGKFYITIIDAPGHRDFIKNMITGTSQADCAVLIVAGGVGEF 123
Query: 366 EAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGY 545
EAGISKNGQTREHALLA+TLGVKQ+I+GVNKMDSTEPPFS KRFEEI KEV +Y+KK+GY
Sbjct: 124 EAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEPPFSQKRFEEITKEVSAYIKKIGY 183
Query: 546 QPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 653
P V FVPISGW+GDNM+E STNMPW+KGW+I RK
Sbjct: 184 NPATVPFVPISGWHGDNMLEASTNMPWFKGWKIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,535,749
Number of Sequences: 369166
Number of extensions: 1400327
Number of successful extensions: 6922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5679
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)