Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A01
(187 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24639|ANXA7_DICDI Annexin A7 (Annexin VII) (Synexin) 32 0.58
sp|Q10172|YDC9_SCHPO Hypothetical protein C25G10.09c in chr... 32 0.58
sp|P35085|CBPA_DICDI Calcium-binding protein 30 1.7
sp|P46889|FTSK_ECOLI DNA translocase ftsK 29 2.9
sp|Q04887|SOX9_MOUSE Transcription factor SOX-9 29 2.9
sp|Q83S00|FTSK_SHIFL DNA translocase ftsK 29 2.9
sp|Q92734|TFG_HUMAN Protein TFG (TRK-fused gene protein) 29 2.9
sp|Q8X5H9|FTSK_ECO57 DNA translocase ftsK 29 2.9
sp|Q62280|SSXT_MOUSE SSXT protein (SYT protein) (Synovial s... 29 3.8
sp|P31396|HR3_DROME Probable nuclear hormone receptor HR3 (... 29 3.8
>sp|P24639|ANXA7_DICDI Annexin A7 (Annexin VII) (Synexin)
Length = 462
Score = 31.6 bits (70), Expect = 0.58
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPY----VAGTNYGQPVSYAAG 154
P + Y PQ Y Q G YP QQGY P P G G PV +A G
Sbjct: 89 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQGYPPQQGYPPVGVPVGVPVGFAPG 145
Score = 31.2 bits (69), Expect = 0.76
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQTY 172
P + Y PQ Y Q G YP QQGY P P G Q G P Q Y
Sbjct: 65 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQGY 123
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 166
P + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 29 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 85
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 166
P + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 35 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 91
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 166
P + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 41 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 97
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 166
P + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 47 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 103
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 166
P + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 53 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 109
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 PQNRPYAPQTPY--QAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQ 166
P + Y PQ Y Q G YP QQGY P P G Q G P Q
Sbjct: 59 PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQ 115
>sp|Q10172|YDC9_SCHPO Hypothetical protein C25G10.09c in chromosome I
Length = 1794
Score = 31.6 bits (70), Expect = 0.58
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 5 QNRPYAPQTPYQAGQ-----VQATNYPRQQGYTPGVSQPYVAGTNYGQPVSY-AAGQPS 163
++ PYAPQ P Q Q ATN Q ++P + N G P++ AAGQPS
Sbjct: 1557 RSSPYAPQEPVQKPQAINNIAPATNLGTSQSFSPRMGPV----NNSGSPLAMNAAGQPS 1611
>sp|P35085|CBPA_DICDI Calcium-binding protein
Length = 467
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +2
Query: 2 PQNRPYAP-QTPYQAGQVQATNYPRQQGYTPGVSQPYVAG----TNYGQPVSYAAGQPSQ 166
P +P AP Q P Q GQ YP QQ PG P G GQP +Y QP Q
Sbjct: 127 PPQQPGAPGQYPPQQGQ--PGQYPPQQPGQPGQYPPQQQGQYPPQQPGQPGAYPPQQPGQ 184
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +2
Query: 17 YAPQTPYQAGQV---QATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQTYVIVDG 187
Y PQ P Q GQ Q YP QQ PG P GQP +Y Q Q + G
Sbjct: 147 YPPQQPGQPGQYPPQQQGQYPPQQPGQPGAYPP----QQPGQPGAYPPQQGVQNTLAKTG 202
>sp|P46889|FTSK_ECOLI DNA translocase ftsK
Length = 1329
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 PQNRPYAPQTPYQAGQVQATNYPRQQG-YTPGVSQPYVAGTNYGQPVSYAAGQPSQTY 172
P +P PQ PY A A P QQ Y P QP VAG + + P TY
Sbjct: 396 PLQQPVQPQQPYYA---PAAEQPAQQPYYAPAPEQP-VAGNAWQAEEQQSTFAPQSTY 449
>sp|Q04887|SOX9_MOUSE Transcription factor SOX-9
Length = 507
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +2
Query: 2 PQNRPYAPQTPYQAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAGQPSQTYV 175
PQ P APQ P Q QA P QQ P Q + T +P GQ +T++
Sbjct: 346 PQQPPQAPQAPQAPPQQQA---PPQQPQAPQQQQAHTLTTLSSEP-----GQSQRTHI 395
>sp|Q83S00|FTSK_SHIFL DNA translocase ftsK
Length = 1342
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 PQNRPYAPQTPYQAGQVQATNYPRQQG-YTPGVSQPYVAGTNYGQPVSYAAGQPSQTY 172
P +P PQ PY A A P QQ Y P QP VAG + + P TY
Sbjct: 396 PLQQPVQPQQPYYA---PAAEQPAQQPYYAPAPEQP-VAGNAWQAEEQQSTFAPQSTY 449
>sp|Q92734|TFG_HUMAN Protein TFG (TRK-fused gene protein)
Length = 400
Score = 29.3 bits (64), Expect = 2.9
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 PQNRPYAPQTPYQAGQVQATNYPRQQGYTPGVSQPYVAGTNYG-QPVSYAAGQPSQ 166
PQ P P Y QA+NYP Q YT SQP TNY P S PSQ
Sbjct: 308 PQQLPAQPPQQY-----QASNYPAQT-YTAQTSQP----TNYTVAPASQPGMAPSQ 353
>sp|Q8X5H9|FTSK_ECO57 DNA translocase ftsK
Length = 1342
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 PQNRPYAPQTPYQAGQVQATNYPRQQG-YTPGVSQPYVAGTNYGQPVSYAAGQPSQTY 172
P +P PQ PY A A P QQ Y P QP VAG + + P TY
Sbjct: 396 PLQQPVQPQQPYYA---PAAEQPAQQPYYAPAPEQP-VAGNAWQAEEQQSTFAPQSTY 449
>sp|Q62280|SSXT_MOUSE SSXT protein (SYT protein) (Synovial sarcoma associated Ss18-alpha)
Length = 418
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +2
Query: 5 QNRPYAPQTPYQAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQP----VSYAAGQPSQ 166
Q Y P Q Q YP QQGY PG Q Y G + G P +Y GQ Q
Sbjct: 332 QQDAYQGPPPQQGYPPQQQQYPGQQGY-PGQQQSY--GPSQGGPGPQYPNYPQGQGQQ 386
>sp|P31396|HR3_DROME Probable nuclear hormone receptor HR3 (dHR3)
Length = 487
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 2 PQNRPYAPQTPYQAGQVQATNYPRQQGYTPGVSQPYVAGTNYGQPVSYAAG-QPSQT 169
P + Y QTP + Q+ NY Y+ G S V YG P Y+A P QT
Sbjct: 153 PDSSVYDTQTPSSSDQLHHNNY---NSYSGGYSNNEV---GYGSPYGYSASVTPQQT 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,523,223
Number of Sequences: 369166
Number of extensions: 337604
Number of successful extensions: 1430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)