Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_P03
(644 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39234|TGA3_ARATH Transcription factor TGA3 (AtbZIP22) 43 6e-04
sp|Q61817|CREB3_MOUSE Cyclic AMP-responsive element binding... 40 0.004
sp|O43889|CREB3_HUMAN Cyclic AMP-responsive element binding... 39 0.011
sp|Q8SQ19|CREB3_BOVIN Cyclic AMP-responsive element binding... 38 0.026
sp|P14233|TGA1B_TOBAC TGACG-sequence-specific DNA-binding p... 38 0.026
sp|P39970|YEN5_YEAST Hypothetical 54.6 kDa protein in MEI4-... 38 0.026
sp|P78962|ATF21_SCHPO Transcription factor atf21 37 0.033
sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 (AtbZIP50) 37 0.044
sp|P40535|ACA2_YEAST ATF/CREB activator 2 (Chromosome stabi... 37 0.044
sp|O24646|HY5_ARATH Transcription factor HY5 (LONG HYPOCOL5... 37 0.057
>sp|Q39234|TGA3_ARATH Transcription factor TGA3 (AtbZIP22)
Length = 384
Score = 43.1 bits (100), Expect = 6e-04
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Frame = -1
Query: 608 QLVSNQSEILNTVLYNNYVMSTPEVQYS---HSLKSDIQNALINKMNCQ----TKKIGSK 450
+++S+ S V + + M P Q S KSDI N N+ N Q T ++ ++
Sbjct: 2 EMMSSSSSTTQVVSFRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDAR 61
Query: 449 NSGYNRHQNHVPSI--NTSQLPPSQEIFNNYSPADSDTKRK---NRDAAKKSRQRKKLYI 285
+ ++ + S+ N+ + PS + + KR+ NR+AA+KSR RKK ++
Sbjct: 62 PEADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKMKRRLAQNREAARKSRLRKKAHV 121
Query: 284 AHLEKEICRYKKMEKVL 234
LE+ + ++E+ L
Sbjct: 122 QQLEESRLKLSQLEQEL 138
>sp|Q61817|CREB3_MOUSE Cyclic AMP-responsive element binding protein 3 (Transcription
factor LZIP)
Length = 404
Score = 40.4 bits (93), Expect = 0.004
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = -1
Query: 341 KRKNRDAAKKSRQRKKLYIAHLEKEICRYKKMEKVLQNKLKDSEK 207
K +N+ AA++SR++KK+Y+ LE + +Y + LQNK++ E+
Sbjct: 192 KIRNKRAAQESRKKKKVYVVGLESRVLKYTAQNRELQNKVQRLEE 236
>sp|O43889|CREB3_HUMAN Cyclic AMP-responsive element binding protein 3 (Luman protein)
(Transcription factor LZIP-alpha)
Length = 395
Score = 38.9 bits (89), Expect = 0.011
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Frame = -1
Query: 341 KRKNRDAAKKSRQRKKLYIAHLEKEICRYKKMEKVLQNKLKDSEK-------TVGYLQSV 183
K +N+ +A++SR++KK+Y+ LE + +Y LQNK++ E+ + LQ++
Sbjct: 181 KIRNKRSAQESRRKKKVYVGGLESRVLKYTAQNMELQNKVQLLEEQNLSLLDQLRKLQAM 240
Query: 182 IAQLNENSSISN 147
+ +++ +S S+
Sbjct: 241 VIEISNKTSSSS 252
>sp|Q8SQ19|CREB3_BOVIN Cyclic AMP-responsive element binding protein 3 (Luman protein)
Length = 368
Score = 37.7 bits (86), Expect = 0.026
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Frame = -1
Query: 341 KRKNRDAAKKSRQRKKLYIAHLEKEICRYKKMEKVLQNKLKDSEK-------TVGYLQSV 183
K +N+ +A++SR++KK+Y+ LE + +Y LQNK++ E+ + LQ++
Sbjct: 160 KIRNKKSAQESRRKKKVYVGGLESRVLKYTAQNLELQNKVQLLEEQNLSLLDQLRRLQAM 219
Query: 182 IAQLNENSSISN 147
+ Q +S S+
Sbjct: 220 VIQTANKASSSS 231
>sp|P14233|TGA1B_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1B (TGA1b) (HSBF)
Length = 242
Score = 37.7 bits (86), Expect = 0.026
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Frame = -1
Query: 599 SNQSEILNTVLYNNY-VMSTPEVQYS--------HSLKSDIQNALINKMNCQTKKIGSKN 447
SN SE LN +N V S+P + + +K + NA I+K + K+ S
Sbjct: 99 SNVSEGLNYPSDSNKSVHSSPNFENNSIKNGAVEEKIKLEGVNANISKCSSLLKRKKSSE 158
Query: 446 SGYNRHQNHVPSINTSQLPPSQEIFNNYSPADSDTKR----KNRDAAKKSRQRKKLYIAH 279
N IN Q + + +N + + + KR +NR++A+ SRQRKK Y+
Sbjct: 159 DSNN--------INIHQKLTNVALSDNVNNDEDEKKRARLVRNRESAQLSRQRKKHYVEE 210
Query: 278 LEKEICRYKKMEKVLQNKLKDSEKTVGYL 192
LE ++ +++ + ++D V Y+
Sbjct: 211 LEDKV-------RIMHSTIQDLNAKVAYI 232
>sp|P39970|YEN5_YEAST Hypothetical 54.6 kDa protein in MEI4-SAP1 intergenic region
Length = 489
Score = 37.7 bits (86), Expect = 0.026
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Frame = -1
Query: 599 SNQSEILNTVLYNNYVMSTPEVQYSHSLKS----DIQNALINKMNCQTKKIGSKNSGYNR 432
S Q+ LN Y P+V +H+ D +AL N +N + + S +
Sbjct: 297 SCQNAELNISSSLPYESKCPDVNLTHANSKPQYKDATSALKNNINSEKDVHTAPFS--SM 354
Query: 431 HQNHVPSINTSQLPPSQEIFNNYSPADSDTK--------RKNRDAAKKSRQRKKLYIAHL 276
H I P Q+I NN + K +NR AA K RQRKK+ L
Sbjct: 355 HTTATFQIKQEARP--QKIENNTAGLKDGAKAWKRARLLERNRIAASKCRQRKKMSQLQL 412
Query: 275 EKEICRYKKMEKVLQNKLKDSEKTVGYLQSV 183
++E + K +++ K+++ EK V ++ +
Sbjct: 413 QREFDQISKENTMMKKKIENYEKLVQKMKKI 443
>sp|P78962|ATF21_SCHPO Transcription factor atf21
Length = 355
Score = 37.4 bits (85), Expect = 0.033
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Frame = -1
Query: 482 MNCQTKKIGSKNSGYNRHQNH-----VPSINTSQLPPSQEIFNNYSPADSDTKRK----- 333
+N K+ S N YN V S P S + + D KR+
Sbjct: 217 LNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRGTPGSNNVHTASNNETPDMKRRRFLER 276
Query: 332 NRDAAKKSRQRKKLYIAHLEKE---ICRYKKMEKVLQNKLKD 216
NR AA K RQ+KKL+ +LEK C K ++L ++L++
Sbjct: 277 NRIAASKCRQKKKLWTQNLEKTAHIACEQSKALRILVSQLRE 318
>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 (AtbZIP50)
Length = 368
Score = 37.0 bits (84), Expect = 0.044
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Frame = -1
Query: 536 VQYSHSLKSDIQNALINKMNCQTKKIGSKNSGYNRHQNHVP---SINTSQLPPSQEIFNN 366
V + + KSDI + + N T I + + H N++ + +Q+ Q N+
Sbjct: 26 VGWGNVFKSDIND---HSPNTATSSIIQVDPRIDDHNNNIKINYDSSHNQIEAEQPSSND 82
Query: 365 YSPADSDTKRK-------NRDAAKKSRQRKKLYIAHLEKEICRYKKMEKVLQ 231
D K NR+AA+KSR RKK Y+ LE+ + ++E+ L+
Sbjct: 83 NQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELE 134
>sp|P40535|ACA2_YEAST ATF/CREB activator 2 (Chromosome stability protein CST6)
Length = 587
Score = 37.0 bits (84), Expect = 0.044
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 12/165 (7%)
Frame = -1
Query: 602 VSNQSEILNTVLYNNYVMSTPEVQYSHSLKSDIQNALINKMNCQTKKIGSKNSGYNR--- 432
+ +QS I + N+V + + + S+ SD++ M G +N G +
Sbjct: 340 LGDQSVIYSKSQQRNFVNAPSKNTPAESI-SDLEG-----MTTFAPTTGGENRGKSALRE 393
Query: 431 -HQN--HVPSINTSQLPPSQEIFNNYSPADSDTKR-----KNRDAAKKSRQRKKLYIAHL 276
H N P S L + N P + KR +NR AA K RQRKK+ L
Sbjct: 394 SHSNPSFTPKSQGSHLNLAANTQGNPIPGTTAWKRARLLERNRIAASKCRQRKKVAQLQL 453
Query: 275 EKEICRYKKMEKVLQNKLKDSEKTVGYLQSVI-AQLNENSSISND 144
+KE K ++L KL EK + + L E+ ++ D
Sbjct: 454 QKEFNEIKDENRILLKKLNYYEKLISKFKKFSKIHLREHEKLNKD 498
>sp|O24646|HY5_ARATH Transcription factor HY5 (LONG HYPOCOL5 protein) (AtbZIP56)
Length = 168
Score = 36.6 bits (83), Expect = 0.057
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = -1
Query: 362 SPADSDTKR-----KNRDAAKKSRQRKKLYIAHLEKEICRYKKMEKVLQNKLKDSEKTVG 198
+PA+ + KR +NR +A+++R+RKK Y++ LE + K L+NK + E+ +
Sbjct: 83 TPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRV-------KDLENKNSELEERLS 135
Query: 197 YLQS 186
LQ+
Sbjct: 136 TLQN 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,416,767
Number of Sequences: 369166
Number of extensions: 1476053
Number of successful extensions: 4387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4380
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)