Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O19
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34940|CH60_PLAFG Chaperonin CPN60, mitochondrial precursor 35 0.20
sp|P35763|PERF_RAT Perforin 1 precursor (P1) (Lymphocyte po... 33 0.76
sp|P28859|DPOL_ICHV1 DNA polymerase 33 0.99
sp|Q9Y7P6|YCI2_SCHPO Protein C1902.02 in chromosome III 33 1.3
sp|P97929|BRCA2_MOUSE Breast cancer type 2 susceptibility p... 32 1.7
sp|P51612|XPC_MOUSE DNA-repair protein complementing XP-C c... 32 2.2
sp|Q58937|Y1542_METJA Hypothetical protein MJ1542 31 3.8
sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase... 30 6.4
sp|Q9PQB5|Y376_UREPA Hypothetical protein UU376 30 6.4
sp|P42379|CLPP_CHLEU ATP-dependent Clp protease proteolytic... 30 6.4
>sp|P34940|CH60_PLAFG Chaperonin CPN60, mitochondrial precursor
Length = 700
Score = 35.4 bits (80), Expect = 0.20
Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 25/126 (19%)
Frame = +1
Query: 202 THVIRS-IDAGAV----LSKTDFLSSEFVRQMNSKGMNWNIGVSSS-------------A 327
T+ ++S ID G V ++ + + S F+++++ K + ++ +SS+
Sbjct: 458 TNAVKSAIDIGYVPGGGVTYLEIIKSNFIQEIHKK-IEEDLQISSNNDEKKYLELIGNLE 516
Query: 328 SFLKVFKLDMNIKINSTD-------EQINEYNKNCVKTILNSKGGIPFGTDINLDKWVAS 486
S +++ K+ NI ++S D + N VK ILNSK FG D+N +K+V
Sbjct: 517 SEMELQKMGANIVVSSLDVITKQIADNAGVNGDNVVKIILNSKDKYGFGYDVNTNKFVNM 576
Query: 487 LDEKLV 504
+++ ++
Sbjct: 577 VEKGII 582
>sp|P35763|PERF_RAT Perforin 1 precursor (P1) (Lymphocyte pore forming protein)
(Cytolysin)
Length = 554
Score = 33.5 bits (75), Expect = 0.76
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Frame = +1
Query: 40 VQWRHIFYKSLSEPDTPLHPNFIYKITELANWLILYNETFYSMYLADMIIRDFGTHVIRS 219
V+ R ++ +P PLHP+F + L + E Y +I +GTH I +
Sbjct: 173 VECRMYSFRLAQKP--PLHPDFRKALKNLPHNFNSSTEHAYRR-----LISSYGTHFITA 225
Query: 220 IDAGAVLS----------KTDFLSSEFVRQMNSKGMNWNIGVSSSAS--FLKVFKLDMNI 363
+D G +S D L+++ V S +IG +S S + +
Sbjct: 226 VDLGGRVSVLTALRTCQLTLDGLTADEVGDCLSVEAQVSIGAQASVSSEYKACEEKKKQH 285
Query: 364 KINSTDEQINEYNKNCVKTI---LNSKGGIPFG---TDINLDKWVASLDEKLVAIDRIGD 525
KI ++ Q Y + V+ + L+S + FG T + W+ASL + +D +
Sbjct: 286 KIATSFHQT--YRERHVEVLGGPLDSSNDLLFGNQATPEHFSTWIASLPTRPDVVDYSLE 343
Query: 526 PIYFIL 543
P++ +L
Sbjct: 344 PLHILL 349
>sp|P28859|DPOL_ICHV1 DNA polymerase
Length = 985
Score = 33.1 bits (74), Expect = 0.99
Identities = 23/94 (24%), Positives = 46/94 (48%)
Frame = +1
Query: 364 KINSTDEQINEYNKNCVKTILNSKGGIPFGTDINLDKWVASLDEKLVAIDRIGDPIYFIL 543
K+ + E+I+ Y K +K + + FG DI +D ++ A D + + ++
Sbjct: 435 KMCTIKERIDSYRK--MKDTVQNFKSHGFGCDI-IDMMYVCKRKEFEAKDGSLNTVAQLI 491
Query: 544 NKKVLPHLSNNIIHRISNLLMESVERYYKANSRK 645
KK PH + IH++ ++ + ++ YY+A K
Sbjct: 492 IKKFKPHKATPKIHKMDDITYDKLDGYYRAGGTK 525
>sp|Q9Y7P6|YCI2_SCHPO Protein C1902.02 in chromosome III
Length = 574
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 524 SPILSIATNFSSKDATHLSKFISVPNGIPPFEFKIV 417
S +LS +TN +S DA + I VP+ +PP F ++
Sbjct: 454 SDLLSTSTNMASSDALETASMIGVPSAMPPNSFDML 489
>sp|P97929|BRCA2_MOUSE Breast cancer type 2 susceptibility protein homolog (Fanconi anemia
group D1 protein homolog)
Length = 3329
Score = 32.3 bits (72), Expect = 1.7
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 577 IIHRISNLLMESVERYYKANSRKGCMDMSSPNFNSDANID----GGNCIEPVVYFKFGGA 744
++H + ++E++ K K SS N SD N D ++PV+ FGG+
Sbjct: 928 VVHDYTEKSRNNIEQHQKGTEDKDFKSNSSLNMKSDGNSDCSDKWSEFLDPVLNHNFGGS 987
Query: 745 YSTCT 759
+ T +
Sbjct: 988 FRTAS 992
>sp|P51612|XPC_MOUSE DNA-repair protein complementing XP-C cells homolog (Xeroderma
pigmentosum group C complementing protein homolog)
(p125)
Length = 930
Score = 32.0 bits (71), Expect = 2.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 646 GCMDMSSPNFNSDANIDGGNCIEPVVYFKFGGAYSTCTGPTD 771
GC+ M+ PN N A G +C++ + F F G Y C TD
Sbjct: 763 GCVQMTLPNLNRVARKLGIDCVQAITGFDFHGGY--CHPVTD 802
>sp|Q58937|Y1542_METJA Hypothetical protein MJ1542
Length = 808
Score = 31.2 bits (69), Expect = 3.8
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Frame = +1
Query: 211 IRSIDAGAVLSKTDF-LSSEFVRQMNSKGMNWNIGVSSSASFLKVFKLDMNIKINSTDEQ 387
I+SI A +LS DF ++ E + G N N+G ++ LK+ + +N KI++ D +
Sbjct: 7 IKSIAAKNLLSFDDFKITFEDGDVVTIFGPN-NVGKTNLFRVLKLLRNIINEKISAVDLE 65
Query: 388 INEYNKNCVKTILNSKGGIPFGTDINLDKWVASLDEKLVAIDRIGDPIYFILNKKVLPHL 567
I +NKN + D+ DK + K + I+F +N L L
Sbjct: 66 IYLHNKNLKAAKIE--------VDVIFDKSDKEVIAKFL-------KIFFKINAPDLIRL 110
Query: 568 SNNIIHRISNLLMESVERYYKANS 639
NN+ I N +++ Y+ A S
Sbjct: 111 CNNLKLNIINSIID----YFSAGS 130
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 (Ubiquitin thiolesterase
36) (Ubiquitin-specific processing protease 36)
(Deubiquitinating enzyme 36)
Length = 1121
Score = 30.4 bits (67), Expect = 6.4
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 547 KKVLPHLSNNIIHRISNLLMESVERYYKANSRKGCMDMSSPNFNSDANIDGGNCIEPVVY 726
KK +P IHR SN+L S++R+ + K D+ P F + N +PV+Y
Sbjct: 306 KKKVPASKRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIRPYMSQNNGDPVMY 365
>sp|Q9PQB5|Y376_UREPA Hypothetical protein UU376
Length = 242
Score = 30.4 bits (67), Expect = 6.4
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +1
Query: 112 KITELANWLILYNETFYSMYLADMIIRDFGTHVIRSIDAGAVLSKTDFLSSEFVRQMNSK 291
KI+E+ N TF LAD +DF VI+ D + +D E + ++ K
Sbjct: 51 KISEVKNNTATIEVTFSKFELADANKKDFVLEVIKKADTNPI-QASDLKYDEASKTLSGK 109
Query: 292 --GMNWNIGVSSSASFLKVFKLDMN---IKINSTDEQINEYNKN 408
G+N N+ ++ KL +N +K N +E + Y KN
Sbjct: 110 LSGLNSNVD-------YEISKLTLNGKEVKFNE-EELLKSYVKN 145
>sp|P42379|CLPP_CHLEU ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Contains: Ceu clpP intein (Insertion IS2)]
Length = 1010
Score = 30.4 bits (67), Expect = 6.4
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Frame = +1
Query: 106 IYKIT-ELANW---LILYNETFYSMYLADMIIRDFGTHVIRSIDAGAVLSKTDFLSSEFV 273
+ KIT E NW Y++ Y YLA+M+ +DF DA + S + S F
Sbjct: 128 LQKITMEWLNWNAQFFDYSDEPYLFYLAEMLSKDFNKG-----DARMLFSNNNKFSMPFS 182
Query: 274 RQMN------------SKGMNWNIG-VSSSASFLKVFKLDMNIKINSTD-EQIN 393
+ +N + G NWN ++S F++ N + D +QIN
Sbjct: 183 QMLNTGSMSDPRRPQSTNGANWNSSEQNNSLDIYSPFRMLANFEAQDYDFKQIN 236
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,262,920
Number of Sequences: 369166
Number of extensions: 1957060
Number of successful extensions: 5113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5105
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)