Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O15
(835 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 53 9e-07
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 50 1e-05
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 46 1e-04
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 43 0.001
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 43 0.001
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 43 0.001
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 42 0.003
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 40 0.006
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 40 0.006
sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperp... 39 0.018
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 53.1 bits (126), Expect = 9e-07
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +1
Query: 310 KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNAHR 489
K+ G LYP ++ NL GKI GM+L +EN + ++I ++ AL + + EA +L HR
Sbjct: 569 KQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHR 628
Query: 490 IT 495
+T
Sbjct: 629 VT 630
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 49.7 bits (117), Expect = 1e-05
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Frame = +1
Query: 223 GPPPIMVTNRPFCGPSQITALDK-PG--------------SNNIKEYYGNILYPRVKIHA 357
G P +M + P GP++ A+ PG + K+ G +LYP+V +
Sbjct: 542 GRPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVRE 601
Query: 358 GNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLL 477
L+GKI GM+L + N + L+ +++AL +NEA +L
Sbjct: 602 EKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 45.8 bits (107), Expect = 1e-04
Identities = 33/124 (26%), Positives = 57/124 (45%)
Frame = +1
Query: 115 RHLVAAPNQNVNVPFLQNPLITNPVYPQMFPLLSNVGPPPIMVTNRPFCGPSQITALDKP 294
R VAA P+ + +P +P + PL P + V + P + L
Sbjct: 509 RAAVAAAAPRAVAPYKYASSVRSP-HPAIQPL--QAPQPAVHVQGQE---PLTASMLAAA 562
Query: 295 GSNNIKEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANL 474
K+ G L+P ++ NL GKI GM+L ++N + +++ + +L S ++EA +
Sbjct: 563 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 622
Query: 475 LNAH 486
L AH
Sbjct: 623 LQAH 626
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 43.1 bits (100), Expect = 0.001
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = +1
Query: 310 KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNAHR 489
K+ G L+P ++ +L GKI GM+L ++N + +++ + +L S ++EA +L AH+
Sbjct: 559 KQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 43.1 bits (100), Expect = 0.001
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = +1
Query: 310 KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNAHR 489
K+ G L+P ++ +L GKI GM+L ++N + +++ + +L S ++EA +L AH+
Sbjct: 559 KQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +1
Query: 310 KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNAHR 489
K+ G L+P ++ L GKI GM+L ++N + +++ + +L S ++EA +L AH+
Sbjct: 559 KQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 41.6 bits (96), Expect = 0.003
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 310 KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNAHR 489
K+ G L+P ++ L GKI GM+L ++N + ++ + +L S ++EA +L AH+
Sbjct: 554 KQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQ 613
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 40.4 bits (93), Expect = 0.006
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = +1
Query: 163 QNPLITNPVYPQ--MFPLLSNVG-----PPPIMVTNRPFCGPSQITALDKPGSNNIKEYY 321
QNP++ ++P+ MF G PP M N P + + L +
Sbjct: 500 QNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTML 559
Query: 322 GNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNA 483
G +LYP V+ K+ GM+L ++ + +L+ + AL + + EA ++L +
Sbjct: 560 GEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRS 613
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 40.4 bits (93), Expect = 0.006
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 310 KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHVITNLINNEAALVSMINEAANLLNAHR 489
K+ G L+P ++ L GKI GM+L ++N + +++ + +L ++EA +L AH+
Sbjct: 557 KQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVAVLQAHQ 616
>sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog)
Length = 2792
Score = 38.9 bits (89), Expect = 0.018
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 235 IMVTNRPFCGPSQITALDKPGSNNI-KEYYGNILYPRVKIHAGNLTGKIVGMILHLENHV 411
+ + RPF S+ D P ++ G LYPRV+ KI GM+L L
Sbjct: 2362 LSIDTRPFRPASEGNPSDDPDPLPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQ 2421
Query: 412 ITNLINNEAALVSMINEAANLLNAH 486
+ L+ +E +L + ++EA L+ AH
Sbjct: 2422 LLLLLASEDSLRARVDEAMELIIAH 2446
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,832,914
Number of Sequences: 369166
Number of extensions: 1623754
Number of successful extensions: 4303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4222
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)