Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O11
(763 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41116|RL8_XENLA 60S ribosomal protein L8 401 e-111
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 399 e-111
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 398 e-111
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 397 e-110
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 396 e-110
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 390 e-108
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 378 e-104
sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 377 e-104
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 377 e-104
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 376 e-104
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 401 bits (1030), Expect = e-111
Identities = 184/249 (73%), Positives = 220/249 (88%)
Frame = +3
Query: 3 ILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFK 182
I QRKG GSVFKAH KHRKGAAKLRA D+AERNG++KGIV+DIIHDPGRGAPLAKV F+
Sbjct: 5 IRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFR 64
Query: 183 DPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRG 362
DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG
Sbjct: 65 DPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRG 124
Query: 363 RIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGR 542
++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGR
Sbjct: 125 KLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGR 184
Query: 543 AYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTG 722
AYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG
Sbjct: 185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTG 244
Query: 723 LLRGTKVIK 749
LRGTK ++
Sbjct: 245 RLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 399 bits (1026), Expect = e-111
Identities = 183/249 (73%), Positives = 220/249 (88%)
Frame = +3
Query: 3 ILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFK 182
I QRKG GSVFKAH KHRKGAAKLRA D+AER+G++KGIV+DIIHDPGRGAPLAKV F+
Sbjct: 5 IRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFR 64
Query: 183 DPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRG 362
DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG
Sbjct: 65 DPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRG 124
Query: 363 RIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGR 542
++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGR
Sbjct: 125 KLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGR 184
Query: 543 AYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTG 722
AYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG
Sbjct: 185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTG 244
Query: 723 LLRGTKVIK 749
LRGTK ++
Sbjct: 245 RLRGTKTVQ 253
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 398 bits (1023), Expect = e-111
Identities = 183/249 (73%), Positives = 220/249 (88%)
Frame = +3
Query: 3 ILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFK 182
I QRKG GSVF+AH KHRKGAA+LRA D+AER+G++KGIV+DIIHDPGRGAPLAKV F+
Sbjct: 5 IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 64
Query: 183 DPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRG 362
DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG
Sbjct: 65 DPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRG 124
Query: 363 RIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGR 542
++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGR
Sbjct: 125 KLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGR 184
Query: 543 AYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTG 722
AYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG
Sbjct: 185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTG 244
Query: 723 LLRGTKVIK 749
LRGTK ++
Sbjct: 245 RLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 397 bits (1019), Expect = e-110
Identities = 182/249 (73%), Positives = 219/249 (87%)
Frame = +3
Query: 3 ILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFK 182
I QRKG GSVF+AH KHRKGAA+LRA D+AER+G++KGIV+DIIHDPGRGAPLAKV F+
Sbjct: 5 IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 64
Query: 183 DPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRG 362
DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG
Sbjct: 65 DPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRG 124
Query: 363 RIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGR 542
++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGR
Sbjct: 125 KLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGR 184
Query: 543 AYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTG 722
AYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A RRTG
Sbjct: 185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTG 244
Query: 723 LLRGTKVIK 749
LRGTK ++
Sbjct: 245 RLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 396 bits (1017), Expect = e-110
Identities = 182/249 (73%), Positives = 219/249 (87%)
Frame = +3
Query: 3 ILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFK 182
I QRKG GSVFKAH KHRKGAAKLR D+AER+G++KGIV+DIIHDPGRGAPLAKV F+
Sbjct: 5 IRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFR 64
Query: 183 DPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRG 362
DPY++KK + FIAAEG+ TGQF+YCGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG
Sbjct: 65 DPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRG 124
Query: 363 RIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGR 542
++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGR
Sbjct: 125 KLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGR 184
Query: 543 AYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTG 722
AYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG
Sbjct: 185 AYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTG 244
Query: 723 LLRGTKVIK 749
LRGTK ++
Sbjct: 245 RLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 390 bits (1001), Expect = e-108
Identities = 180/246 (73%), Positives = 215/246 (87%)
Frame = +3
Query: 12 QRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPY 191
QRKG GSVFKAH KHRKGAAKLR D+AER+G++KGIV+DIIHDPGRG PLAKV F+DPY
Sbjct: 8 QRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPY 67
Query: 192 KYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIA 371
++KK + FIAAEG+ TGQFV+CGKKA++N+GNVLP+ +PEGT+IC LEEK GDRG++A
Sbjct: 68 RFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLA 127
Query: 372 RASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYH 551
RASGN A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYH
Sbjct: 128 RASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYH 187
Query: 552 KYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLR 731
KYK KRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AARRTG LR
Sbjct: 188 KYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLR 247
Query: 732 GTKVIK 749
GTK ++
Sbjct: 248 GTKTVQ 253
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 378 bits (970), Expect = e-104
Identities = 172/250 (68%), Positives = 211/250 (84%)
Frame = +3
Query: 12 QRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPY 191
QRKG G +FK+H KHRKGA+KLR DYAER+G++KG+V+DIIHDPGRGAPLA + F+DPY
Sbjct: 8 QRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPY 67
Query: 192 KYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIA 371
KYK V T +AAEGM TGQF++CG KA+I +GN++P+ ++PEGT ICN+E KSGDRG IA
Sbjct: 68 KYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIA 127
Query: 372 RASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYH 551
RASGN A +++HN +T KTR++LPSG KK++ S RAMIG+VAGGGR +KP+LKAGR+YH
Sbjct: 128 RASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYH 187
Query: 552 KYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLR 731
KYKAKRN WPRVRGV MNPV+HPHGGGNHQHIG PSTV R G+KVGL+AARRTG +R
Sbjct: 188 KYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIR 247
Query: 732 GTKVIKTTKQ 761
G K +K TK+
Sbjct: 248 GGKPVKFTKE 257
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8
Length = 256
Score = 377 bits (968), Expect = e-104
Identities = 174/243 (71%), Positives = 208/243 (85%)
Frame = +3
Query: 12 QRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPY 191
QRKG GSVFKAH K RKGAAKLR+ D+AER+G+++G+V+DIIHDPGRGAPLA V F+DPY
Sbjct: 8 QRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPY 67
Query: 192 KYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIA 371
+YK + FIA EGM TGQFVYCG+KA + +GNV+P+ +PEGT+ICNLEEK+GDRGR+A
Sbjct: 68 RYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLA 127
Query: 372 RASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYH 551
R SGN A +++HN +T KTRVKLPSG KK++ S+ RAM+GIVAGGGRI+KP+LKAGRAYH
Sbjct: 128 RTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYH 187
Query: 552 KYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLR 731
KYK KRN WP+VRGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AARRTG +R
Sbjct: 188 KYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIR 247
Query: 732 GTK 740
G K
Sbjct: 248 GGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 377 bits (968), Expect = e-104
Identities = 177/243 (72%), Positives = 206/243 (84%)
Frame = +3
Query: 12 QRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPY 191
QRKG GSVF AHTK RKG KLRA DYAER+G+LKG V+ IIHDPGRGAPLA V F+DPY
Sbjct: 8 QRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPY 67
Query: 192 KYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIA 371
K+ Q FIAAEGM TGQFVYCGK+A++ +GNVLPI +PEGT++CNLEEK+GDRG++A
Sbjct: 68 KFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLA 127
Query: 372 RASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYH 551
R SGN A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAY
Sbjct: 128 RTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYR 187
Query: 552 KYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLR 731
KYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AARRTG +R
Sbjct: 188 KYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIR 247
Query: 732 GTK 740
G K
Sbjct: 248 GGK 250
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 376 bits (965), Expect = e-104
Identities = 175/243 (72%), Positives = 205/243 (84%)
Frame = +3
Query: 12 QRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPY 191
QRKG GSVF +HTK RKGA KLR+ DYAER+G++KG+V+DIIHDPGRGAPLA V F+DPY
Sbjct: 8 QRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPY 67
Query: 192 KYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIA 371
K+K + FIA EG+ TGQFVYCGKKA + VGNV+P+ ++PEGT++CNLEEK GDRGR+A
Sbjct: 68 KFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLA 127
Query: 372 RASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYH 551
RASGN A ++ HN + +TRVKLPSG KK+L SS R M+GIVAGGGRI+KP+LKAGRAYH
Sbjct: 128 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 187
Query: 552 KYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLR 731
KYK KRNCWP VRGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AARRTG +R
Sbjct: 188 KYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIR 247
Query: 732 GTK 740
G K
Sbjct: 248 GGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,199,593
Number of Sequences: 369166
Number of extensions: 1899892
Number of successful extensions: 5573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5187
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)