Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O10
(281 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 79 3e-15
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 79 4e-15
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 78 6e-15
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 78 6e-15
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 75 4e-14
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 74 8e-14
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 73 2e-13
sp|Q9VPS5|CH60B_DROME Probable 60 kDa heat shock protein ho... 70 2e-12
sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondria... 69 3e-12
sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial precursor 65 4e-11
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 79.0 bits (193), Expect = 3e-15
Identities = 41/53 (77%), Positives = 45/53 (84%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDKASA 160
A+ EY N+IEKGIIDPTKVVRTA+ DASGVASLLTTAE VVTEI K+D A A
Sbjct: 501 ALKGEYGNLIEKGIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKEDGAPA 553
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 78.6 bits (192), Expect = 4e-15
Identities = 39/50 (78%), Positives = 46/50 (92%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDK 151
AM ++VNM+EKGIIDPTKVVRTAL+DA+GVASLLTTAE VVTEI K++K
Sbjct: 505 AMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEK 554
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 78.2 bits (191), Expect = 6e-15
Identities = 39/50 (78%), Positives = 46/50 (92%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDK 151
AM ++VNM+EKGIIDPTKVVRTAL+DA+GVASLLTTAE VVTEI K++K
Sbjct: 505 AMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEK 554
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 78.2 bits (191), Expect = 6e-15
Identities = 39/50 (78%), Positives = 46/50 (92%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDK 151
AM ++VNM+EKGIIDPTKVVRTAL+DA+GVASLLTTAE VVTEI K++K
Sbjct: 505 AMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEK 554
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 75.5 bits (184), Expect = 4e-14
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDK 151
AM ++VNM+ KGIIDPTKVVRTAL+DA+GVASLLTTAE VVTEI K++K
Sbjct: 505 AMVGDFVNMVGKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEK 554
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 74.3 bits (181), Expect = 8e-14
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIK 142
A+N+EYVNMIEKGIIDPTKVVR AL DASGVASLLTTAE V+ ++ K
Sbjct: 507 ALNNEYVNMIEKGIIDPTKVVRRALTDASGVASLLTTAEAVICDMPK 553
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 576
Score = 73.2 bits (178), Expect = 2e-13
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDKASA 160
A+ EY NMIE+GIIDPTKVVRTA+ DA+GVASLLTTAE VVTE+ ++ A+A
Sbjct: 505 ALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLLTTAEAVVTELPLEEAAAA 557
>sp|Q9VPS5|CH60B_DROME Probable 60 kDa heat shock protein homolog 1, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 648
Score = 69.7 bits (169), Expect = 2e-12
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDKAS 157
AM DEY ++EKGIIDPTKV+RTA+ DA+GVASLL+T E V+T+ DD S
Sbjct: 500 AMGDEYCRLVEKGIIDPTKVLRTAITDAAGVASLLSTTEVVITDSRNDDLLS 551
>sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondrial precursor (Heat shock
protein 60) (HSP-60)
Length = 568
Score = 68.9 bits (167), Expect = 3e-12
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDD 148
A+N ++V+M E GIIDPTKVVRTAL DASGVASLL T E VVTEI K++
Sbjct: 497 ALNGKFVDMFEAGIIDPTKVVRTALQDASGVASLLATTECVVTEIPKEE 545
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial precursor
Length = 587
Score = 65.5 bits (158), Expect = 4e-11
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +2
Query: 2 AMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLLTTAETVVTEIIKDDKAS 157
A EYV+M++ GIIDP KV+RTALVDA+ V+SLLTT E VVTEI + AS
Sbjct: 515 AAKGEYVDMVKSGIIDPVKVIRTALVDAASVSSLLTTTEAVVTEIPTKEDAS 566
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,343,971
Number of Sequences: 369166
Number of extensions: 190039
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)