Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O04
(465 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JYV5|FRPC_NEIMB Iron-regulated protein frpC 34 0.18
sp|Q9K0K9|FRPA_NEIMB Iron-regulated protein frpA 34 0.18
sp|P55126|FRPA_NEIMC Iron-regulated protein frpA 33 0.32
sp|P55127|FRPC_NEIMC Iron-regulated protein frpC 33 0.32
sp|P09918|LOX3_PEA Seed lipoxygenase-3 32 0.54
sp|P27480|LOXA_PHAVU Lipoxygenase 1 30 2.7
sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 (L-3) 29 4.5
sp|Q8GV94|MATK_GALNI Maturase K (Intron maturase) 28 7.8
>sp|Q9JYV5|FRPC_NEIMB Iron-regulated protein frpC
Length = 1829
Score = 33.9 bits (76), Expect = 0.18
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -3
Query: 244 GQQENVFFVYNRQ-------IENDVYNHLNVIYVCNLLILNAFYPHLNEIFFYLENLT 92
GQ N + + + + ND Y+HL NLL P+LN+I F +EN T
Sbjct: 721 GQDSNTLYYMSEEDALNIVKVTNDTYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDT 778
>sp|Q9K0K9|FRPA_NEIMB Iron-regulated protein frpA
Length = 1302
Score = 33.9 bits (76), Expect = 0.18
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -3
Query: 244 GQQENVFFVYNRQ-------IENDVYNHLNVIYVCNLLILNAFYPHLNEIFFYLENLT 92
GQ N + + + + ND Y+HL NLL P+LN+I F +EN T
Sbjct: 594 GQDSNTLYYMSEEDALNIVKVTNDTYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDT 651
>sp|P55126|FRPA_NEIMC Iron-regulated protein frpA
Length = 1115
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 208 QIENDVYNHLNVIYVCNLLILNAFYPHLNEIFFYLENLT 92
++ ND Y+HL NLL P+LN+I F +EN T
Sbjct: 626 KVTNDTYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDT 664
>sp|P55127|FRPC_NEIMC Iron-regulated protein frpC
Length = 1829
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 208 QIENDVYNHLNVIYVCNLLILNAFYPHLNEIFFYLENLT 92
++ ND Y+HL NLL P+LN+I F +EN T
Sbjct: 740 KVTNDTYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDT 778
>sp|P09918|LOX3_PEA Seed lipoxygenase-3
Length = 861
Score = 32.3 bits (72), Expect = 0.54
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -3
Query: 262 FQVSAFGQQENVFFVYNRQIENDVYNHLNVIYVCNLLILNAFYPHLNEIFF 110
F + F Q E FF+ + ++ D+ NH ++ +VCN I NA + ++ IFF
Sbjct: 118 FYIKNFMQTE--FFLVSLTLD-DIPNHGSIYFVCNSWIYNAKHHKIDRIFF 165
>sp|P27480|LOXA_PHAVU Lipoxygenase 1
Length = 862
Score = 30.0 bits (66), Expect = 2.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 262 FQVSAFGQQENVFFVYNRQIENDVYNHLNVIYVCNLLILNAFYPHLNEIFF----YLENL 95
F + F Q E FF+ + +E D+ NH + +VCN + NA + IFF YL N
Sbjct: 123 FYIKNFMQSE--FFLVSLTLE-DIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNE 179
Query: 94 T 92
T
Sbjct: 180 T 180
>sp|P09186|LOX3_SOYBN Seed lipoxygenase-3 (L-3)
Length = 857
Score = 29.3 bits (64), Expect = 4.5
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 262 FQVSAFGQQENVFFVYNRQIENDVYNHLNVIYVCNLLILNAFYPHLNEIFF 110
F + F Q E FF+ + +E D+ NH ++ +VCN I NA + IFF
Sbjct: 115 FYIKNFMQTE--FFLVSLTLE-DIPNHGSIHFVCNSWIYNAKLFKSDRIFF 162
>sp|Q8GV94|MATK_GALNI Maturase K (Intron maturase)
Length = 516
Score = 28.5 bits (62), Expect = 7.8
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 268 NVFQVSA--FGQQENVFFVYNRQIENDVYNHLNVIYVCNLLILNAFYPHLNEIFFYLENL 95
++F SA FG +++ +Y ++IY+ N N F H + FFY + +
Sbjct: 40 SIFYESAEVFGYDNKSSLALVKRLITRIYQQKSLIYLVNNSKQNRFVGHTHNNFFYSQMI 99
Query: 94 TDPF 83
++ F
Sbjct: 100 SESF 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,183,682
Number of Sequences: 369166
Number of extensions: 518168
Number of successful extensions: 1308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)