Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N21
(618 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 i... 159 5e-39
sp|Q9JK81|MYG1_MOUSE MYG1 protein (Gamm1 protein) 129 5e-30
sp|Q9HB07|MYG1_HUMAN MYG1 protein 129 8e-30
sp|Q9P7T6|YIW4_SCHPO Hypothetical UPF0160 protein C694.04c ... 115 1e-25
sp|P40093|YEY6_YEAST Hypothetical UPF0160 protein YER156c 111 1e-24
sp|O84391|Y386_CHLTR Hypothetical UPF0160 protein CT386 45 1e-04
sp|Q9PK08|Y665_CHLMU Hypothetical UPF0160 protein TC0665 43 7e-04
sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn0489/CP0265/CPj0489... 41 0.003
sp|O74796|ORC6_SCHPO Origin recognition complex subunit 6 30 5.0
sp|Q7U524|RNPA_SYNPX Ribonuclease P protein component (RNas... 30 5.0
>sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 in chromosome V
Length = 340
Score = 159 bits (402), Expect = 5e-39
Identities = 82/176 (46%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Frame = +1
Query: 4 KTDENELFEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGG 183
+ D +E F++AM+ +G EF V + N WW ARE+++ A+D R+ + SG I+ E GG
Sbjct: 166 ENDADERFQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGG 225
Query: 184 FPWKSHFFDLE--KNIKEPSKGSQSDSDDAISPYQMRFVLFSDRD--SWRVQCIPVSEKQ 351
PWK HFFD+E KNI +DD I+ ++LFSD SWRVQ IPV +
Sbjct: 226 CPWKEHFFDIEVEKNI----------ADDNIT-----YILFSDSTNASWRVQAIPVDKMS 270
Query: 352 GFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIGGNKSYDGALEMAVKTLE 519
F+NR L WRG+R+D+L +S IPG VFVH SGFIGGN + +GA+ MA K LE
Sbjct: 271 SFENRMPLPAAWRGLRDDDLSKESGIPGGVFVHISGFIGGNLTREGAIAMARKALE 326
>sp|Q9JK81|MYG1_MOUSE MYG1 protein (Gamm1 protein)
Length = 380
Score = 129 bits (325), Expect = 5e-30
Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 FEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFPWKSHF 204
F +AM LV EF+ ++NFY + W AR +V++A+ R+ V SG I++ +GG PWK H
Sbjct: 216 FRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHL 275
Query: 205 FDLEKNIKEPSKGSQSDSDDAISPYQMRFVLFSDR-DSWRVQCIPVSEKQGFKNRTGLLE 381
+ LE + + FV+++D+ WRVQC+P E F++R L E
Sbjct: 276 YHLESELS--------------PKVAITFVIYTDQAGQWRVQCVP-KEPHSFQSRLPLPE 320
Query: 382 EWRGIREDELCNKSRIPGSVFVHASGFIGGNKSYDGALEMAVKTL 516
WRG+R+ L S IPG +FVHASGFIGG+ + +GAL MA TL
Sbjct: 321 PWRGLRDKALDQVSGIPGCIFVHASGFIGGHHTREGALNMARATL 365
>sp|Q9HB07|MYG1_HUMAN MYG1 protein
Length = 376
Score = 129 bits (323), Expect = 8e-30
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 1/171 (0%)
Frame = +1
Query: 25 FEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFPWKSHF 204
F++AM LV EF+ +++FY + W AR +V++A+ R+ V SG I++ +G PWK H
Sbjct: 217 FKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSGEIVELAKGACPWKEHL 276
Query: 205 FDLEKNIKEPSKGSQSDSDDAISPYQMRFVLFSDR-DSWRVQCIPVSEKQGFKNRTGLLE 381
+ LE + P + FV+++D+ WR+QC+P E F++R L E
Sbjct: 277 YHLESGLS--------------PPVAIFFVIYTDQAGQWRIQCVP-KEPHSFQSRLPLPE 321
Query: 382 EWRGIREDELCNKSRIPGSVFVHASGFIGGNKSYDGALEMAVKTLEHSGLL 534
WRG+R++ L S IPG +FVHASGFIGG+ + +GAL MA TL L
Sbjct: 322 PWRGLRDEALDQVSGIPGCIFVHASGFIGGHPTREGALSMARATLAQRSYL 372
>sp|Q9P7T6|YIW4_SCHPO Hypothetical UPF0160 protein C694.04c in chromosome I
Length = 324
Score = 115 bits (287), Expect = 1e-25
Identities = 67/167 (40%), Positives = 97/167 (58%)
Frame = +1
Query: 19 ELFEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFPWKS 198
E F+KA L+G+ FV V Y W A+ + ++AI K IL +Q FPWK
Sbjct: 174 ECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKA----KDSPILIVDQF-FPWKG 228
Query: 199 HFFDLEKNIKEPSKGSQSDSDDAISPYQMRFVLFSDRDSWRVQCIPVSEKQGFKNRTGLL 378
H FD+EK + G ++ Q ++ ++SD +WRVQ + + + F R L
Sbjct: 229 HLFDIEKEL-----GIEN---------QFKYAIYSDGKAWRVQAVSI-DPTSFTCRLPLP 273
Query: 379 EEWRGIREDELCNKSRIPGSVFVHASGFIGGNKSYDGALEMAVKTLE 519
E WRGIR+++L + IPG +FVHASGFIGGN++++GALEMA K L+
Sbjct: 274 EPWRGIRDEKLSELTGIPGCIFVHASGFIGGNQTFEGALEMARKALD 320
>sp|P40093|YEY6_YEAST Hypothetical UPF0160 protein YER156c
Length = 338
Score = 111 bits (278), Expect = 1e-24
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 3/167 (1%)
Frame = +1
Query: 25 FEKAMKLVGSEFVDKVNFYVNCWWSAREMVQKAIDNRYNVHKSGLILKFEQGGFPWKSHF 204
F +A + +G FV V Y W A+ +V +AID R +V KSG I+ Q PWK H
Sbjct: 189 FARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQF-CPWKEHL 247
Query: 205 FDLE--KNIKEPSKGSQSDSDDAISPYQMRFVLFSDRD-SWRVQCIPVSEKQGFKNRTGL 375
++LE KNI++ Q+ FVLF+D +WRV +P++ F+ R GL
Sbjct: 248 YELEREKNIEK----------------QIEFVLFTDSSGAWRVSTVPINSTS-FQFRRGL 290
Query: 376 LEEWRGIREDELCNKSRIPGSVFVHASGFIGGNKSYDGALEMAVKTL 516
E RG+R++EL KS +PG +F+HA+GFIGG KS + E+A +L
Sbjct: 291 PEPLRGLRDEELSTKSGVPGCIFIHAAGFIGGAKSKEAVYELAKMSL 337
>sp|O84391|Y386_CHLTR Hypothetical UPF0160 protein CT386
Length = 289
Score = 45.4 bits (106), Expect = 1e-04
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Frame = +1
Query: 142 VHKSGLILKFEQGGFPWKSHFFDLEKNIKEPSKGSQSDSDDAISPYQMRFVLFSDRDSWR 321
+ K + L+F++ W+ +FF L G +S + FV F D W
Sbjct: 177 MEKESVCLRFDRP-LAWQENFFSL---------GGES--------HPAAFVSFPCSDQWI 218
Query: 322 VQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG---GNKSYDGA 492
++ IP + + + R EEW G+ D+L + IPG++F H F+ +S + A
Sbjct: 219 LRGIPPTLDRRMEVRIPFPEEWAGLLGDQLVQATGIPGAIFCHKGLFLSVWDSQESCEEA 278
Query: 493 LEMAVK 510
L + +K
Sbjct: 279 LNLVLK 284
>sp|Q9PK08|Y665_CHLMU Hypothetical UPF0160 protein TC0665
Length = 289
Score = 42.7 bits (99), Expect = 7e-04
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Frame = +1
Query: 142 VHKSGLILKFEQGGFPWKSHFFDLEKNIKEPSKGSQSDSDDAISPYQMRFVLFSDRDSWR 321
+ K + L+F++ W+ +FF L G ++ + FV F D W
Sbjct: 177 MEKEDVCLRFDRP-LAWQENFFSL---------GGEN--------HPAAFVSFPCSDQWI 218
Query: 322 VQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG---GNKSYDGA 492
++ IP + + + R E+W G+ D+L + IPG++F H F+ +S + A
Sbjct: 219 LRGIPPTLDRRMEVRIPFPEDWAGLLGDQLVKATGIPGAIFCHKGLFLSVWDSRESCEEA 278
Query: 493 LEMAVK 510
L + +K
Sbjct: 279 LNLVLK 284
>sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn0489/CP0265/CPj0489/CpB0509
Length = 290
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +1
Query: 289 FVLFSDRDSWRVQCIPVSEKQGFKNRTGLLEEWRGIREDELCNKSRIPGSVFVHASGFIG 468
FV F D W ++ IP + + + R E W G+ EL S IPG+VF H F+
Sbjct: 209 FVCFPSCDQWILRGIPPNLDRRMEVRVPFPENWAGLLGKELSKVSGIPGAVFCHKGLFLS 268
Query: 469 GNKSYDGALEMAVKTLEHSGLL 534
+ + TL+ G++
Sbjct: 269 VWTNRESCQRALRLTLQDRGII 290
>sp|O74796|ORC6_SCHPO Origin recognition complex subunit 6
Length = 264
Score = 30.0 bits (66), Expect = 5.0
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +1
Query: 103 REMVQKAIDNRYNV-HKSGLILKFEQGGFPWKSHFFDLEKNIKEPSKGSQSDSDDAISPY 279
+++V+ + N + HK G+I+ +L N E K +QS D S
Sbjct: 127 KQLVKAVVTNDMRIEHKRGIIIAAYLLVSAKAFGKDELHINHTERRK-AQSVLQDTSSAL 185
Query: 280 QMRFVLFSDRDSWRVQCIPVSEKQGFKNRTGLLEEWRGI 396
Q+++ + +SW+ + IP++ +G++++ ++ W GI
Sbjct: 186 QIQYWMHVLSESWQYKEIPLNGIEGYESQKQRIKPWSGI 224
>sp|Q7U524|RNPA_SYNPX Ribonuclease P protein component (RNaseP protein) (RNase P protein)
(Protein C5)
Length = 128
Score = 30.0 bits (66), Expect = 5.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 544 MLIRVIPNVPRF*LPFLKRHHSFCC 470
M++RV+P PR P L+RH + CC
Sbjct: 30 MVLRVMPEEPRLLRPELRRHPTRCC 54
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,107,710
Number of Sequences: 369166
Number of extensions: 1410220
Number of successful extensions: 3883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3874
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)