Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N18
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54014|RL3_METJA 50S ribosomal protein L3P 32 0.64
sp|Q8RDN0|TGT_FUSNN Queuine tRNA-ribosyltransferase (tRNA-g... 30 2.4
sp|O35412|SI1L1_RAT Signal-induced proliferation-associated... 29 4.2
sp|Q82570|RRP2_IAFOM RNA-directed RNA polymerase subunit P2... 29 4.2
sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associat... 29 4.2
sp|Q93112|GSTT5_ANOGA Glutathione S-transferase 1-5 (GST cl... 28 5.5
sp|O46895|RK4_GUITH Chloroplast 50S ribosomal protein L4 28 5.5
sp|Q90268|PAX2A_BRARE Paired box protein Pax-2a (Pax[Zf-b])... 28 5.5
sp|O43166|SI1L1_HUMAN Signal-induced proliferation-associat... 28 7.1
sp|Q5PAG8|SYE2_ANAMM Glutamyl-tRNA synthetase 2 (Glutamate-... 28 9.3
>sp|P54014|RL3_METJA 50S ribosomal protein L3P
Length = 335
Score = 31.6 bits (70), Expect = 0.64
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Frame = +2
Query: 44 NNFDNLKTRNIKIP-------VTRLKPLKEKWDDIILVKELNLQCKADPTKRPLTVYLRS 202
+N D R IK+P V L+ LK+K +D+ ++ N + P K+P + +R
Sbjct: 105 DNLDKELERKIKLPKKEDRKTVEDLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRI 164
Query: 203 PSND--------EVKLQKGIDFLNAFSKGFDFIDCVSLIRMDGLYIRTMYIKDIKR-TIK 355
D + L K ++ + F +G + +D + + + G + +KR +K
Sbjct: 165 GGKDIEERLNYAKEILGKQLNITDVFQEG-ELVDTIGVTKGKG------FQGQVKRWGVK 217
Query: 356 ---GDHFTRAVGRMCGANG 403
G H + VGR G+ G
Sbjct: 218 IQFGKHARKGVGRHVGSIG 236
>sp|Q8RDN0|TGT_FUSNN Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 373
Score = 29.6 bits (65), Expect = 2.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 236 IDFLNAFSKGFDFIDCVSLIRMDGLYIRTMYIKDIKRTIKGDHF 367
+D LNA G D +DCV R+ T++ KD + IK + +
Sbjct: 255 VDMLNAVESGIDMMDCVQPTRL--ARHGTVFTKDGRLVIKSERY 296
>sp|O35412|SI1L1_RAT Signal-induced proliferation-associated 1-like protein 1
(SPA-1-like protein p1294)
Length = 1822
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 255 NALRKSIPFCSFTSSFEGERK*TVNGLFVGSALHCKFNSFTKIISSHFSLSG 100
N L S P+ EGERK +++ GS C+ SF +SSH + +G
Sbjct: 408 NELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESTSFESALSSHCTNAG 459
>sp|Q82570|RRP2_IAFOM RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 28.9 bits (63), Expect = 4.2
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 56 NLKTRNIKIPVTRLKPLKEKWDDIILVKELNLQCKADPTKRPLTVYLRSPSNDEVKLQKG 235
N + + RL+P K + ++ + ++ L+ P RP+ +Y+R+ ++K++ G
Sbjct: 519 NFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRSAIAPVSRPMFLYVRTNGTSKIKMKWG 578
Query: 236 ID 241
++
Sbjct: 579 ME 580
>sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-like protein 1
Length = 1782
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 255 NALRKSIPFCSFTSSFEGERK*TVNGLFVGSALHCKFNSFTKIISSHFSLSG 100
N L S P+ EGERK +++ GS C+ SF +SSH + +G
Sbjct: 408 NELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESTSFESALSSHCTNAG 459
>sp|Q93112|GSTT5_ANOGA Glutathione S-transferase 1-5 (GST class-theta)
Length = 209
Score = 28.5 bits (62), Expect = 5.5
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 188 VYLRSPSN--DEVKLQKGIDFLNAFSKGFDFIDCVSLIRMDGLYIRTMYIKDI 340
++ + P+N +E K++ +DFLN F G ++ SL D + T+ D+
Sbjct: 116 IFAKQPANPENEQKMKDAVDFLNTFLDGHKYVAGDSLTIADLSILATISTYDV 168
>sp|O46895|RK4_GUITH Chloroplast 50S ribosomal protein L4
Length = 223
Score = 28.5 bits (62), Expect = 5.5
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +2
Query: 47 NFDNLKTRNIKIPVTRLKPLKEKWDDIILVKELNLQCKADPTKRPLTVYLRSPSNDEVKL 226
+F NLKTR++ I + L +K I+ V A+PT L Y+++ SN ++
Sbjct: 140 DFTNLKTRDLVIKCSNLIENYKKDQKILFV--------AEPTASGLWRYVKNISNVDLIY 191
Query: 227 QKGIDFLNAFSKGFDFIDCVSL 292
G+D C +L
Sbjct: 192 TTGLDLKKILQAHHIIFTCKAL 213
>sp|Q90268|PAX2A_BRARE Paired box protein Pax-2a (Pax[Zf-b]) (No isthmus protein)
Length = 410
Score = 28.5 bits (62), Expect = 5.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 159 LHCKFNSFTKIISSHFSLSGFNRVTGIFI 73
+HCK + F+ + SH G N++ G+F+
Sbjct: 3 IHCKADPFSAMHLSHIGHGGVNQLGGVFV 31
>sp|O43166|SI1L1_HUMAN Signal-induced proliferation-associated 1-like protein 1 (High-risk
human papilloma viruses E6 oncoproteins targeted protein
1) (E6-targeted protein 1)
Length = 1803
Score = 28.1 bits (61), Expect = 7.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 255 NALRKSIPFCSFTSSFEGERK*TVNGLFVGSALHCKFNSFTKIISSHFSLSG 100
N L S P+ EGERK +++ GS C+ SF +SSH + +G
Sbjct: 408 NELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESASFESTLSSHCTNAG 459
>sp|Q5PAG8|SYE2_ANAMM Glutamyl-tRNA synthetase 2 (Glutamate--tRNA ligase 2) (GluRS 2)
Length = 466
Score = 27.7 bits (60), Expect = 9.3
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +2
Query: 194 LRSPSNDEVKLQKGIDFLNAFSKGFDFIDCVSLIRMDG--LYIRTMYIKD----IKRTIK 355
L+SP N E+K G+ S + ID + ++R +G Y+ + + D I I+
Sbjct: 141 LKSPENREIKFTDGV--YGEISVSSEQIDDMVILRSNGHPTYLLAVVVDDHDMCITHIIR 198
Query: 356 G-DHFTRAVGRM 388
G DH T + +M
Sbjct: 199 GSDHITNTIKQM 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,749,254
Number of Sequences: 369166
Number of extensions: 771273
Number of successful extensions: 1894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1894
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)